Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11860 709 / 0 Glycine cleavage T-protein family (.1.2.3) AT1G60990 66 / 2e-11 Glycine cleavage T-protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001624 [exp] 383 / 1e-132 AT1G11860 304 / 5e-102 Glycine cleavage T-protein family (.1.2.3) Lus10012692 [exp] 51 / 1e-06 AT1G60990 509 / 2e-180 Glycine cleavage T-protein family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G009600 [exp] 728 / 0 AT1G11860 735 / 0.0 Glycine cleavage T-protein family (.1.2.3) Potri.011G006800 [exp] 726 / 0 AT1G11860 734 / 0.0 Glycine cleavage T-protein family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0289 [flax] [poplar] FBD PF01571 [flax] [poplar] GCV_T Aminomethyltransferase folate-binding domain CL0289 [flax] [poplar] PF08669 [flax] [poplar] GCV_T_C Glycine cleavage T-protein C-terminal barrel domain
Representative CDS sequence Show only first row Show all	>Lus10001441 pacid=23170706 polypeptide=Lus10001441 locus=Lus10001441.g ID=Lus10001441.BGIv1.0 annot-version=v1.0 ATGATGAGAGGGGGAGGTCTATGGCAATCAATGGCGCGACACCTCTCACGTCGCCCGGACAGCAAGAAATCCGCCGCCTCCGCCATCGCCACTGGTGGCC GGAGATACCTGGCATCCGAGGCTGCCGATCTGAAGAAGACAGTCCTGTACGATTTCCACGTGTCCCACGGCGGGAAGATGGTCCCTTTCGCAGGGTGGAG CATGCCGATTCAGTACAAGGATTCAATCATGGACTCGACCACCAACTGCAGGGAGAACGGGAGCTTGTTCGACGTCTCTCATATGTGTGGGCTGAGCCTC AAGGGGAAAGACGCCATTTCTTTCCTTGAGAAGCTTGTGATTGCTGATGTGGCCTCGCTTGCTCCCGGCACTGGCTCTTTGACTGTTTTCACTAATGAGA AAGGTGGAGCCATTGACGACTCTGTTATTACTAAAGTGACCGATGACCACCTTTACTTGGTGGTTAATGCTGGCTGTAGGGATAAGGATCTGGCTCACAT TGAGGAGCATATGAAGGCGTTTAAGGCTAAAGGTGGTGATGTTGCTTGGCATATTCATGATGAGAGATCCCTTCTTGCCCTCCAGGGTCCTCTTGCAGCA CCAGTTCTTCAACACTTGACTAAGGATGATTTGAGCAAGATGTACTTTGGTGAGTTCCGTATCTTGGACATCAATGGCTCTTCCTGCTACCTCACTCGGA CAGGGTACACTGGCGAAGACGGTTTCGAGATCTCGGTTCCTTCAGAGAACGCAGTGGACTTAGCCAAAGCGCTCCTCGAAAAGTCTGAAGGCAAGATAAG GCTGACAGGGCTAGGTGCTCGTGACAGTCTTCGTCTCGAAGCCGGTCTCTGTCTGTACGGTAATGACATGGAACAGCACATAACTCCGGTGGAGGCAGGG TTAACTTGGGCCATAGGGAAGAGGAGAAGAGCTGAAGGTGGATTCCTAGGTGCGGAGGTGATCCTGAAGCAGCTCGAGGAAGGTCCGAAGATCAGGCGTG TTGGGTTCACATCTTCAGGTCCACCCCCGAGGTCCCACAGCGAGATTCAGGACACGAATGGGGCGAACATTGGAGAGGTGACTAGCGGAGGGTTCAGTCC GTGCCTCAAGAAGAACATTTCCATGGGGTACGTGAAGTCCGGGCTGCACAAGGCCGGAACCACTGTGAAATTGGTGGTAAGGGGGAAAGCTTATGATGGT GTTGTTACTAAGATGCCTTTTGTACCAACCAAATACTACAAGCCTACCTAA
AA sequence Show only first row Show all	>Lus10001441 pacid=23170706 polypeptide=Lus10001441 locus=Lus10001441.g ID=Lus10001441.BGIv1.0 annot-version=v1.0 MMRGGGLWQSMARHLSRRPDSKKSAASAIATGGRRYLASEAADLKKTVLYDFHVSHGGKMVPFAGWSMPIQYKDSIMDSTTNCRENGSLFDVSHMCGLSL KGKDAISFLEKLVIADVASLAPGTGSLTVFTNEKGGAIDDSVITKVTDDHLYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVAWHIHDERSLLALQGPLAA PVLQHLTKDDLSKMYFGEFRILDINGSSCYLTRTGYTGEDGFEISVPSENAVDLAKALLEKSEGKIRLTGLGARDSLRLEAGLCLYGNDMEQHITPVEAG LTWAIGKRRRAEGGFLGAEVILKQLEEGPKIRRVGFTSSGPPPRSHSEIQDTNGANIGEVTSGGFSPCLKKNISMGYVKSGLHKAGTTVKLVVRGKAYDG VVTKMPFVPTKYYKPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11860			Glycine cleavage T-protein fam...		Lus10001441 [exp]	0	1
AT1G11860			Glycine cleavage T-protein fam...		Lus10001624 [exp]	1.0	0.9709
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Lus10009180 [exp]	1.7	0.9024
AT3G12780		PGK1	phosphoglycerate kinase 1 (.1)		Lus10031168 [exp]	8.5	0.9039
AT5G48300		APS1, ADG1	ADP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10025187 [exp]	8.7	0.8638
AT2G41150			unknown protein		Lus10008860 [exp]	9.1	0.8343
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Lus10026429 [exp]	10.6	0.8633
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10017401 [exp]	14.1	0.8881
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030087 [exp]	14.7	0.8669
AT3G12780		PGK1	phosphoglycerate kinase 1 (.1)		Lus10031744 [exp]	16.4	0.9011
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020417 [exp]	17.1	0.8806

Compare expression of checked genes

Lus10001441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.