Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30170 453 / 2e-161 Peroxidase family protein (.1) AT2G18980 447 / 3e-159 Peroxidase superfamily protein (.1) AT4G37530 411 / 2e-144 Peroxidase superfamily protein (.1.2) AT5G67400 403 / 2e-141 RHS19 root hair specific 19 (.1) AT4G37520 398 / 2e-139 Peroxidase superfamily protein (.1.2) AT3G49960 395 / 3e-138 Peroxidase superfamily protein (.1) AT5G14130 322 / 1e-109 Peroxidase superfamily protein (.1) AT4G17690 259 / 7e-85 Peroxidase superfamily protein (.1) AT5G40150 257 / 4e-84 Peroxidase superfamily protein (.1) AT2G34060 251 / 1e-81 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011079 [exp] 423 / 5e-149 AT4G37530 479 / 2e-171 Peroxidase superfamily protein (.1.2) Lus10001622 [exp] 397 / 5e-139 AT2G18980 320 / 4e-109 Peroxidase superfamily protein (.1) Lus10012540 [exp] 348 / 1e-119 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10032035 [exp] 339 / 4e-116 AT5G67400 394 / 3e-138 root hair specific 19 (.1) Lus10017288 [exp] 254 / 5e-83 AT5G42180 462 / 4e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10013955 [exp] 257 / 1e-82 AT2G34060 451 / 1e-158 Peroxidase superfamily protein (.1) Lus10005614 [exp] 253 / 2e-82 AT5G42180 461 / 6e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10035204 [exp] 251 / 3e-82 AT5G67400 270 / 5e-90 root hair specific 19 (.1) Lus10010716 [exp] 249 / 4e-81 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G089900 [exp] 489 / 1e-175 AT4G30170 472 / 6e-169 Peroxidase family protein (.1) Potri.007G053400 [exp] 409 / 1e-143 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.017G064100 [exp] 382 / 3e-133 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.001G329200 [exp] 379 / 4e-132 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.007G074700 [exp] 297 / 8e-100 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.012G076500 [exp] 267 / 4e-88 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.004G052100 [exp] 259 / 9e-85 AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 253 / 1e-82 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.010G036100 [exp] 250 / 2e-81 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1) Potri.012G006800 [exp] 248 / 1e-80 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10001442 pacid=23170694 polypeptide=Lus10001442 locus=Lus10001442.g ID=Lus10001442.BGIv1.0 annot-version=v1.0 ATGGCTGTTCATCACCATCATCCTCTTGCCTTGATTCTCCTCGTAATATTCCTTCTCCCTGCAAATCTCATTGTTCCTTCAGCATCACAGCTCTCCCCGG ACTTCTACAAGAATAGCTGCCCAAATGTGGAGTCCATTGTCCGCTCAGCAGTCCAAGCCAAGTTCCGGCAGACCTTCGTCACTGCTCCCGCCACCCTCCG TCTCTTCTTCCACGACTGCTTCGTCCGGGGATGTGATGCTTCTGTGCTCCTTGCATCCCCCACCAACAATGCTGAGAAGGATCACCCTGACGACATCTCG CTAGCCGGCGATGGATTCGACACGGTCATCAAGGCCAAGGCCGCTGTTGACCGCGTCCCCACTTGCCGCAACAAGGTCTCTTGCGCCGATATCCTTGCTC TCGCTACCCGCGAAGTTGTCTCCCTGACAGGGGGACCGTTCTACAGAGTGGAGCTAGGCAGAAGGGACGGAAGAGTATCAACAAAAGCAAGCGTCCAACG TCAGCTCCCACACGCAAACTTCAACTTGAATCAGCTCAACCAAATGTTCGCCGCACGTTCACTCTCCCAGACGGACATGATCGCACTCTCCGGAGCACAC ACTTTAGGCTTCTCCCACTGTAACCAGTTCTCGAACCGGATATACGGGTTCAGTTCGAGGAACCGGATCGACCCGACCCTCAACTTCCAGTACGCATTGC AGCTCAGGCAGATGTGCCCCGCTCGAGTCGACCCGAGAATCGCGATCAACATGGACCCCACGACTCCTCAGCGGTTCGACAACGCCTACTACCGCAACTT GCAACAGGGGAAGGGTTTGTTCAGCTCGGACCAAGTGCTTTTCACTGACCCACGGTCGAGACCGACTGTGAACCGGTTTGCAGCCAGCAATGCTGCTTTC GGACAGGCGTTTGCTGCCGCTGTCACGAAGCTGGGACGCGTTGGCGTGCTCACCGGATCTCGTGGCGAGATCCGGAGAGACTGCACTCGAGTTAATTAA
AA sequence Show only first row Show all	>Lus10001442 pacid=23170694 polypeptide=Lus10001442 locus=Lus10001442.g ID=Lus10001442.BGIv1.0 annot-version=v1.0 MAVHHHHPLALILLVIFLLPANLIVPSASQLSPDFYKNSCPNVESIVRSAVQAKFRQTFVTAPATLRLFFHDCFVRGCDASVLLASPTNNAEKDHPDDIS LAGDGFDTVIKAKAAVDRVPTCRNKVSCADILALATREVVSLTGGPFYRVELGRRDGRVSTKASVQRQLPHANFNLNQLNQMFAARSLSQTDMIALSGAH TLGFSHCNQFSNRIYGFSSRNRIDPTLNFQYALQLRQMCPARVDPRIAINMDPTTPQRFDNAYYRNLQQGKGLFSSDQVLFTDPRSRPTVNRFAASNAAF GQAFAAAVTKLGRVGVLTGSRGEIRRDCTRVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30170			Peroxidase family protein (.1)		Lus10001442 [exp]	0	1
AT1G72230			Cupredoxin superfamily protein...		Lus10027043 [exp]	1.0	0.9687
AT5G60700			glycosyltransferase family pro...		Lus10041317 [exp]	1.4	0.9614
AT1G55210			Disease resistance-responsive ...		Lus10017228 [exp]	4.5	0.9551
AT1G72230			Cupredoxin superfamily protein...		Lus10025580 [exp]	4.6	0.9502
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	6.0	0.9602
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001869 [exp]	7.3	0.9527
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021103 [exp]	8.1	0.9448
AT5G06250	B3		AP2/B3-like transcriptional fa...		Lus10021326 [exp]	8.5	0.9499
AT3G01190			Peroxidase superfamily protein...		Lus10018374 [exp]	8.9	0.9356
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002075 [exp]	9.5	0.9455

Compare expression of checked genes

Lus10001442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.