Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18840 162 / 2e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G08305 112 / 2e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61800 104 / 1e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G61170 103 / 2e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G45350 103 / 2e-25 CRR4 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 103 / 3e-25 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 102 / 7e-25 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G02330 100 / 2e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18840 97 / 4e-23 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G13600 97 / 5e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022890 [exp] 112 / 3e-28 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024936 [exp] 108 / 6e-27 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017386 [exp] 99 / 2e-24 AT5G08305 357 / 9e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 100 / 3e-24 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10010183 [exp] 98 / 2e-23 AT5G08305 529 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004052 [exp] 98 / 2e-23 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10026006 [exp] 98 / 3e-23 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007341 [exp] 97 / 3e-23 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10005064 [exp] 97 / 4e-23 AT2G21090 513 / 2e-179 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G152000 [exp] 227 / 2e-70 AT3G18840 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G151500 [exp] 227 / 2e-70 AT3G18840 773 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.009G113500 [exp] 219 / 2e-67 AT3G18840 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G155100 [exp] 122 / 7e-32 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G110800 [exp] 109 / 1e-27 AT5G61800 554 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 108 / 3e-27 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.017G141200 [exp] 107 / 5e-27 AT5G66520 407 / 1e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G202600 [exp] 104 / 8e-26 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.017G086100 [exp] 103 / 2e-25 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 100 / 4e-24 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10001444 pacid=23170699 polypeptide=Lus10001444 locus=Lus10001444.g ID=Lus10001444.BGIv1.0 annot-version=v1.0 ATGAGACGAAAAGGACTCAGCTTGTTGAATCTCAAACACCGAATCACTGCCCATTCCCGCTCCATCAAGGTTGGTCTCCCGTTATCTGTTCTCATCTCCA ATCAGCTCATCCACCTCTACTCCGAGCATGGCCTTATCCGCGACGCCCAGAAGCTATTCGAAGAAATGCCTCAAAGAAACCTCTTCTCTTGGAACACCAT CATATCCGCCCAAGTCAAGTCCCACGACTTGGTCAAGGCTAGAGCTCTCTTTGACTCCGCGCCTCTTCGAGATTCCGTCACTTACAACTCCTTGCTGTCT GGCTACGTTCGGATCGGTGGTGGTGTGTTTGAGCGTCTTGCATTTGAATTGTTTGTTGATATGCCTCATGAGATGAGAATCGATGAGGTTACTCTCACGA TCATGGTCAACTTGTGTGCCAAGTCGGAGATGCTATGCTTTGGGACGCAGTTGCAGAGCCACATGGTGAAGACGGCTAACGATTTGAGTGGCTTTTCCGC CAGTTCTTTAATCGGCATGTACTCGAAGTGTGGATGCTTCCGAGAAGCTTGCTCGGCGTTTGAAACTTGCGAAGTAACGGATGTCGATTCTGTTACCAAG AACAGCCCCTGGCAGCTTGTTGCAGGGCAGGTGGTGTGGATGCTTCCGAGAAGCTTGCTCGGCATTTGA
AA sequence Show only first row Show all	>Lus10001444 pacid=23170699 polypeptide=Lus10001444 locus=Lus10001444.g ID=Lus10001444.BGIv1.0 annot-version=v1.0 MRRKGLSLLNLKHRITAHSRSIKVGLPLSVLISNQLIHLYSEHGLIRDAQKLFEEMPQRNLFSWNTIISAQVKSHDLVKARALFDSAPLRDSVTYNSLLS GYVRIGGGVFERLAFELFVDMPHEMRIDEVTLTIMVNLCAKSEMLCFGTQLQSHMVKTANDLSGFSASSLIGMYSKCGCFREACSAFETCEVTDVDSVTK NSPWQLVAGQVVWMLPRSLLGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18840			Tetratricopeptide repeat (TPR)...		Lus10001444 [exp]	0	1
AT2G33760			Pentatricopeptide repeat (PPR)...		Lus10025490 [exp]	136.6	0.5829

Compare expression of checked genes

Lus10001444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.