Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18840 458 / 4e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G13600 293 / 6e-92 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G21090 278 / 2e-87 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G66520 273 / 6e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 274 / 2e-84 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 266 / 2e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G56570 258 / 2e-79 PGN PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59200 255 / 6e-79 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49710 259 / 1e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G25360 258 / 1e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040680 [exp] 286 / 8e-89 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 278 / 1e-86 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002288 [exp] 274 / 2e-85 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015898 [exp] 277 / 3e-85 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004052 [exp] 272 / 1e-84 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018223 [exp] 274 / 4e-84 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019731 [exp] 265 / 1e-80 AT2G13600 436 / 3e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005987 [exp] 258 / 2e-80 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020918 [exp] 260 / 6e-80 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G113500 [exp] 535 / 0 AT3G18840 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G152000 [exp] 532 / 0 AT3G18840 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G151500 [exp] 531 / 0 AT3G18840 773 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G031600 [exp] 274 / 3e-84 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 268 / 4e-83 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 268 / 8e-83 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G088600 [exp] 267 / 2e-82 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G067500 [exp] 274 / 3e-82 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 269 / 3e-82 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G021700 [exp] 267 / 8e-82 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10001445 pacid=23170709 polypeptide=Lus10001445 locus=Lus10001445.g ID=Lus10001445.BGIv1.0 annot-version=v1.0 ATGGATATGGCTGCTACTGTGTTCCACATGTCGACTCAATTGAACGATACCATTTCGTGGAATACTTTAATTTCTGGTTATGTTCATAACGGTTGCGTGG ATGAGATATTCGATTTGTTCCTCAGTATGCGCGAGAATGGCGTCAAGTATGATGTCCATACTTTCGCTAGTCTGTTGATTGCTTGCTCTCGGTTGAAGAA CCCGAATCTCGCAAAGGAAGTTCATGCTTTTGTTGTGAAGAACGGATTCGTTACAAATCGGTTTATATACGACGGAATCGTTGATGCCTACTGCAAATGT GGGAAGATGAATTATGCAGAGTTGCTGCATTTTGATACTAATGGGATGGTTTCAAGTCCGTTTTCGATTACTTCGATGGTTGCAGGGTACTCGTCGCAGG GGAAAATGGAAGAAGCTAGTAAAATGTTTGATTCATTGATCGAGAAGAACGAAATCGCTTGGACGTCTTTGTTTTCCGGCTTTGTCAGGATGCAGAATTG TGAAGCTGTGTTTGATCTGGTAAGCCTGTTCAGAGAAAAGGAAGAGGGAAAGAACCCTAATTGCTTGATACTTGTAAGTGTTCTTGGTGCTTGTGCTCTG CAAGCTGCTCTCTTGTCGGGGAAGCAAGTCCATGGATTCGCACTCCGAATGAGAATCGAAATGGATTTGAAAATGATCAGTGCAGTACTTGATATGTATA TCAAATGTGGCTGTTTAGCCTATGCAGAAAAGATATTCAACAGAGTTTTAGATAAGGATCTGGTCCTGTATAATGTGATGCTGGCAGGCTACGCTAACCA CGGGGATGCAAACGAAGCGATCGGGGTGTTCCGGGAAATGACGAAGAAGGGGATACCACCGGATGGAATCACATTCGTGGCGGTTCTGTCTGCTTGTCGA CATCGCGGGCTGGTGGAGTTAGGGGAACAGTTTTTCGATTCGATGGAAGTTGTGTACGGTATAGTACCGGAAGGGGATCATTACGCGTGCATGATCGATC TTTACGGGAGGGCGAATAGAGTGGATGATGTGGCGAGGTTCATGGAGAGGATTCCTGAGGGAGAAAGGAAAGGTGGTGTGATTCTTGGAGCGTTTCTGAA TGCGTGTAGGAATAATGTGGGATTGGCGAGAAAGGTGGAGGCGACGATGATCGAGGTTGGAGGAGGACGGTATGTGCAATTGGCGAATGTTTATGCAGGG GAAGGGAAGTGGAGTGAGATGCAGAGAGTGAGGAAGATGATGAGAGGAAAGGAGGGGAAGAAGTTTGCTGGTTGTAGTTGGGTTTATGTTGATGGTAGAC CTGAGATATTTACTTCTGGTGATTCGAGCCATCCGAGAGCTAGTTGTGTGTATCAAATGTTAGAGAGGTTAACTGCAGAGCTTAGTAGAAAACTGAAGTA A
AA sequence Show only first row Show all	>Lus10001445 pacid=23170709 polypeptide=Lus10001445 locus=Lus10001445.g ID=Lus10001445.BGIv1.0 annot-version=v1.0 MDMAATVFHMSTQLNDTISWNTLISGYVHNGCVDEIFDLFLSMRENGVKYDVHTFASLLIACSRLKNPNLAKEVHAFVVKNGFVTNRFIYDGIVDAYCKC GKMNYAELLHFDTNGMVSSPFSITSMVAGYSSQGKMEEASKMFDSLIEKNEIAWTSLFSGFVRMQNCEAVFDLVSLFREKEEGKNPNCLILVSVLGACAL QAALLSGKQVHGFALRMRIEMDLKMISAVLDMYIKCGCLAYAEKIFNRVLDKDLVLYNVMLAGYANHGDANEAIGVFREMTKKGIPPDGITFVAVLSACR HRGLVELGEQFFDSMEVVYGIVPEGDHYACMIDLYGRANRVDDVARFMERIPEGERKGGVILGAFLNACRNNVGLARKVEATMIEVGGGRYVQLANVYAG EGKWSEMQRVRKMMRGKEGKKFAGCSWVYVDGRPEIFTSGDSSHPRASCVYQMLERLTAELSRKLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18840			Tetratricopeptide repeat (TPR)...		Lus10001445 [exp]	0	1
AT4G25270		OTP70	organelle transcript processin...		Lus10031134 [exp]	11.3	0.7089
AT3G21740		APO4	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10027182 [exp]	12.4	0.6626
					Lus10015445 [exp]	13.0	0.7000
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Lus10007275 [exp]	37.7	0.6727
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Lus10031394 [exp]	44.5	0.6596
AT3G22550			Protein of unknown function (D...		Lus10007668 [exp]	45.6	0.6217
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10023619 [exp]	50.0	0.6380
AT2G39170			unknown protein		Lus10018298 [exp]	58.8	0.5958
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005876 [exp]	66.1	0.6295
AT5G27440			unknown protein		Lus10041604 [exp]	67.3	0.6308

Compare expression of checked genes

Lus10001445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.