Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28240 699 / 0 Protein of unknown function (DUF616) (.1) AT1G53040 512 / 3e-177 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) AT2G02910 283 / 4e-89 Protein of unknown function (DUF616) (.1) AT1G34550 269 / 7e-81 EMB2756 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) AT4G09630 267 / 2e-80 Protein of unknown function (DUF616) (.1) AT4G38500 259 / 2e-79 Protein of unknown function (DUF616) (.1) AT5G42660 223 / 3e-66 Protein of unknown function (DUF616) (.1) AT5G46220 172 / 3e-47 Protein of unknown function (DUF616) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011175 [exp] 780 / 0 AT1G28240 730 / 0.0 Protein of unknown function (DUF616) (.1) Lus10015438 [exp] 751 / 0 AT1G28240 698 / 0.0 Protein of unknown function (DUF616) (.1) Lus10036741 [exp] 292 / 4e-92 AT2G02910 545 / 0.0 Protein of unknown function (DUF616) (.1) Lus10037186 [exp] 290 / 1e-89 AT2G02910 546 / 0.0 Protein of unknown function (DUF616) (.1) Lus10025082 [exp] 276 / 9e-86 AT4G38500 764 / 0.0 Protein of unknown function (DUF616) (.1) Lus10024001 [exp] 271 / 9e-84 AT4G38500 771 / 0.0 Protein of unknown function (DUF616) (.1) Lus10009419 [exp] 263 / 3e-79 AT1G34550 753 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10028702 [exp] 263 / 5e-79 AT1G34550 750 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10016294 [exp] 213 / 4e-62 AT5G42660 603 / 0.0 Protein of unknown function (DUF616) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G053000 [exp] 750 / 0 AT1G28240 775 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G044100 [exp] 749 / 0 AT1G28240 779 / 0.0 Protein of unknown function (DUF616) (.1) Potri.001G399800 [exp] 528 / 0 AT1G53040 574 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.011G119300 [exp] 526 / 0 AT1G53040 588 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.010G094000 [exp] 285 / 1e-89 AT2G02910 565 / 0.0 Protein of unknown function (DUF616) (.1) Potri.009G138000 [exp] 274 / 8e-85 AT4G38500 725 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G177600 [exp] 270 / 3e-83 AT4G38500 750 / 0.0 Protein of unknown function (DUF616) (.1) Potri.019G084100 [exp] 261 / 3e-78 AT1G34550 707 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.013G113700 [exp] 261 / 7e-78 AT1G34550 708 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.002G149900 [exp] 214 / 2e-62 AT5G42660 633 / 0.0 Protein of unknown function (DUF616) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04765 [flax] [poplar] DUF616 Protein of unknown function (DUF616)
Representative CDS sequence Show only first row Show all	>Lus10001446 pacid=23170713 polypeptide=Lus10001446 locus=Lus10001446.g ID=Lus10001446.BGIv1.0 annot-version=v1.0 ATGGTGGAGGAGGATCATTGGGGATCCGTTCTGGGAGTTATGGCTCATTGGAAAAACCACAGCAGCAACTTCAGCAGCAAAATGACACTAATGGTAGTGG TAATGGTAATCTATTGCCTATTCAATCGGCAATCCGGATTAAGCCTGTTAAAATGTTCAAGGATAAGGAAAGATTGTTCCACTGAAAGATTGTTCCTCTG GATGTTCAAGTTCGCTGGCCGGAAGAAGGTTGGAATGCTCCTGCTCTGTATCATCTCTGCTGCCGTCTTCATCTGGGTTTTGTATGTAGGAAAAGGTGAA GATGCACAGGAAAGCGAGCCGGTCCAAACCATAAGCATTAGTACCAACATTACGACCACTGTCTATACGCAGAACAAAGCAAATTCGGTTCTTCCACCAC CACCTCCTGCATTTTTCTTAGGTTACTCTCTGCCTCCTGGCCATCCATGCCATGCTTTCACTTTGCCTCCTCCCCCGGCAGACAAGAAAAGGACAGGACC ACGACCATGTCCTGTATGTTACCTGCCTGTGGAGGAAGCCATTGCCTTGATGCCGAAGTTTCCCTCATTTTCCCCTGTCTTAAAGGATTTGAGTTACATA ACTGAGAATCCGTTGACTAAATATGGGGAATTCGGAGGCTCAGACTTTGGGGGATATCCTACTGTGGCTCAGCGAACCGATTCTTACGACATTCGAGAGT CGATGAGTGTGCACTGTGGGTTCGTCAAAGGTACAAGAGCTGGCCGGAATACTGGATACGATATCGCGGAGGCTGATCTAGATGCAATGGACCAGTGCAG GGGCGTGGTTGTTTCCTCTGCTATATTCGCGGCTTTCGATGATATACAGCAGCCAAGCAACATTAGCGAATTCGCCAAACGAACGGTATGCTTCTTTATG TTTGTGGATGAAGAAACAGAAACCTATCTTCAAACTAGTGGCCAATTGAGTGATAGCAAGAAGGTCGGGGTGTGGAGGATCGTTCGGATCCATAACTCCC CATATACCGACGGGAGACGCACTGGAAAGATTCCTAAGCTGCTACCGCATAGACTGTTTCCAAATTCTCGCTTCTCAATATGGATCGATGGGAAGCTTGA GCTAGTAGTGGATCCGTATCAAATTCTCGAAAGGCATCTGTGGAGGAAAAACGCCACCTTTGCGATTTCTCGGCATTACAAACGGTTCGATGTCTTTGCT GAAGCTGAGGCAAACAAAGCTGCAGGGAAGTATGACAATGCTTCCATTGATTTCCAGATTGACTTCTACAGAAAGGAAGGCTTAACCCCTTACACGCCGG ATAAGTACCCCATTTTATCCGATGTTCCTGAAGGATGTGTTATCATTAGGGAACATGTTCCGATTAGCAACCTCTTCACTTGTCTTTGGTTCAACGAAGT CGATCGCTTCACTTCGAGAGACCAGATCAGCTTTTCGACGGTGAGGGATAAGATCAGGGCGAGAACAAATTGGACTGTGAACATGTTCTTGGACTGCGAA AGAAGGAACTTTGTGGTTCAGAAATACCACAGAGAAGTGCTTCTACGCATGGCTCCACCTCTTCCACCTGCATTACCAGAGCTTCCGGAAAGTCCGGCAC AACCTGAAATGGAGAAGCCGGAGAGTCTGCCGGAACCCACAATGCAGCTACCGGAAAGGCTGCCGGAAACTCTGTCGGAACCCACATTGCAGATGCCCCA ACCGAGAATTTCTCAAAGGGTGTTCAGGAGGAGAGGAGTAAGGCGTGTGAGAAGGGCCGGCGGGGCGAGGCGACGGGGCGGTGGGCGGCAGACATAA
AA sequence Show only first row Show all	>Lus10001446 pacid=23170713 polypeptide=Lus10001446 locus=Lus10001446.g ID=Lus10001446.BGIv1.0 annot-version=v1.0 MVEEDHWGSVLGVMAHWKNHSSNFSSKMTLMVVVMVIYCLFNRQSGLSLLKCSRIRKDCSTERLFLWMFKFAGRKKVGMLLLCIISAAVFIWVLYVGKGE DAQESEPVQTISISTNITTTVYTQNKANSVLPPPPPAFFLGYSLPPGHPCHAFTLPPPPADKKRTGPRPCPVCYLPVEEAIALMPKFPSFSPVLKDLSYI TENPLTKYGEFGGSDFGGYPTVAQRTDSYDIRESMSVHCGFVKGTRAGRNTGYDIAEADLDAMDQCRGVVVSSAIFAAFDDIQQPSNISEFAKRTVCFFM FVDEETETYLQTSGQLSDSKKVGVWRIVRIHNSPYTDGRRTGKIPKLLPHRLFPNSRFSIWIDGKLELVVDPYQILERHLWRKNATFAISRHYKRFDVFA EAEANKAAGKYDNASIDFQIDFYRKEGLTPYTPDKYPILSDVPEGCVIIREHVPISNLFTCLWFNEVDRFTSRDQISFSTVRDKIRARTNWTVNMFLDCE RRNFVVQKYHREVLLRMAPPLPPALPELPESPAQPEMEKPESLPEPTMQLPERLPETLSEPTLQMPQPRISQRVFRRRGVRRVRRAGGARRRGGGRQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28240			Protein of unknown function (D...		Lus10001446 [exp]	0	1
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Lus10025747 [exp]	2.0	0.8346
AT3G25700			Eukaryotic aspartyl protease f...		Lus10034270 [exp]	3.9	0.7940
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Lus10006237 [exp]	10.4	0.7897
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10009907 [exp]	10.8	0.8042
AT4G20350			oxidoreductases (.1.2)		Lus10003687 [exp]	11.8	0.7798
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10042203 [exp]	14.1	0.7850
AT3G54920		PMR6	powdery mildew resistant 6, Pe...		Lus10037945 [exp]	16.2	0.7763
AT1G11820			O-Glycosyl hydrolases family 1...		Lus10031456 [exp]	16.4	0.7997
AT4G18820			AAA-type ATPase family protein...		Lus10015234 [exp]	17.7	0.8145
AT1G25570			Di-glucose binding protein wit...		Lus10034275 [exp]	20.5	0.7376

Compare expression of checked genes

Lus10001446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.