Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01950 461 / 3e-158 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1) AT1G02390 444 / 2e-151 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT1G06520 366 / 3e-120 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT5G06090 327 / 3e-106 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT3G11430 323 / 9e-105 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT1G01610 293 / 4e-93 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT4G00400 283 / 2e-89 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT2G38110 276 / 1e-86 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT3G11325 192 / 6e-56 Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002421 [exp] 787 / 0 AT4G01950 514 / 2e-179 glycerol-3-phosphate acyltransferase 3 (.1) Lus10020767 [exp] 380 / 7e-127 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10029839 [exp] 365 / 1e-121 AT4G01950 449 / 9e-155 glycerol-3-phosphate acyltransferase 3 (.1) Lus10010934 [exp] 358 / 1e-117 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10031396 [exp] 343 / 1e-111 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10010741 [exp] 311 / 1e-99 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10036684 [exp] 305 / 2e-97 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10002500 [exp] 297 / 8e-95 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10004711 [exp] 288 / 3e-91 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G192600 [exp] 516 / 2e-179 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1) Potri.005G202200 [exp] 392 / 6e-131 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.006G198100 [exp] 320 / 1e-103 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G063900 [exp] 319 / 3e-103 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.010G201200 [exp] 310 / 6e-100 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.008G058200 [exp] 306 / 3e-98 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.014G085500 [exp] 294 / 1e-93 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.016G113100 [exp] 294 / 2e-93 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G097800 [exp] 284 / 1e-89 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10001449 pacid=23161022 polypeptide=Lus10001449 locus=Lus10001449.g ID=Lus10001449.BGIv1.0 annot-version=v1.0 ATGATTCAAACGGCGCCGTATCTGTCCACTTTCTTCCTCTCCTTCATCCGCCTCGTATTCCGTCGTTTCCGTAACCCAACTAAACCCCTCCTCCGTCCAA CTCTCACCACCAAACCATACAAAAAATTCTCCTCCCTCAACGTCGACGACTACGACGTGGACCTCGCGGCCGTGGTAATCGACGTAGAAGGGGCCCTTTT AAAGTCAACATGCTTGTTCCCATACTTCATGATCGTGGCTTTCGAAGCCGGAAGCTTCATCAGAGCCTTACTCCTACTCCTCCTTTACCCGATACTTCGC GTACTGGGAGGAGGTGGAGCAGTGAAGCTGATGATGTTTATCAGCTTCTTCGGGTTAAGGAAGGATAGTTTTAAAGTGGGGAGAAGCGTGCTGCCCAAGT TTCTTCTCGACGATGTCGGTTTGGAGGCGTTTGAGGCGGTGAGTAAGAAGAAGAAGAGGAAGGTGGTGGTTGGTGTTTGTGGGAAGCTGCCGAGGGTTAT GGTGGACAGCTTTTTGAAGGAATACTTGGAGTTCGATCATGTTGTCGCAGGGGAGATTAAGGTTGTCGGCGGCTACTTTATGGGGACGTTAGAAGATGTT CATGATGACCAGAGTTATGTCCGGAGGAGTATCGGCGGTGATGCTCATCATGCTATTGGGATTGCTCGCTTCACTAGGAATTTGGATGATCATCCTATTT TTGCACTTTGCAAGGAGATTTACTTGGTGAGGAGGGCAGACAAGAATAGCTGGCGAGATCTTCCTACAAACAAATACCCTAACCCACTCATCTTCCACGA CGGCCGTCTCGCCGTCCGGCCGACGCTCGTCTCCTCCCTCGTCGTCCTCATCTGGGCTCCCTTCGGCTTCCTCCTCGCTCTAGTCCGCCTCGCCGTAGCC CTCACACTCCCTTTCAGCGCGTCAATCCCGGTCCTCACATTCCTCGGCTTCCGCACCGTCATCTCCGGAGAGAAAGGAAAAGTTTCAACATTGTCGTTGA ATAAAAAAGGTCAACTCTACGTGTGCAACCACCGGACACTGCTGGACCCACTCTACCTATCCTTCGCGCTGAAGAGCAGCTTCACTGCAGTCACCTACAG CATAAGTCGGGTGTCGGAGATTCTGTCCCCAATCAGGACCGTCCGATTGAGCAGGGACCGAGCTCGGGACGCGGAGATGATGGAGGGGAAGCTGCTGAGC CAGCAGGACTTGGTAGTTTGTCCTGAAGGCACCACGTGTCGGGAGCCTTACCTACTGAGGTTTAGTCCGTTGTTCGCCGAGTTGACCGACGAGATTGTCC CGGTCGCGCTGGATGTCCACGTGGACATGTTTTACGGGACCACTGCCAGCGGGACCACCGCCAGCGGGCTCAAGTGTCTGGACCCGCTGTTCTTCCTCCT GAACCCTAGGCCCGAGTATTCCATTCGGGTACTTGACCCGGTTTCGACCCGCGGGCAGTCTTCTTACGACGTGGCTAACTTTGTACAGGGGGAGATTGGG AAGGTGTTGGGGTTTCAGTGTACGAAGCTTACGCGGAAAGACAAGTACTTGGTTTTGGCGGGCAATGAAGGGATCCATAGTCGAGGCTGA
AA sequence Show only first row Show all	>Lus10001449 pacid=23161022 polypeptide=Lus10001449 locus=Lus10001449.g ID=Lus10001449.BGIv1.0 annot-version=v1.0 MIQTAPYLSTFFLSFIRLVFRRFRNPTKPLLRPTLTTKPYKKFSSLNVDDYDVDLAAVVIDVEGALLKSTCLFPYFMIVAFEAGSFIRALLLLLLYPILR VLGGGGAVKLMMFISFFGLRKDSFKVGRSVLPKFLLDDVGLEAFEAVSKKKKRKVVVGVCGKLPRVMVDSFLKEYLEFDHVVAGEIKVVGGYFMGTLEDV HDDQSYVRRSIGGDAHHAIGIARFTRNLDDHPIFALCKEIYLVRRADKNSWRDLPTNKYPNPLIFHDGRLAVRPTLVSSLVVLIWAPFGFLLALVRLAVA LTLPFSASIPVLTFLGFRTVISGEKGKVSTLSLNKKGQLYVCNHRTLLDPLYLSFALKSSFTAVTYSISRVSEILSPIRTVRLSRDRARDAEMMEGKLLS QQDLVVCPEGTTCREPYLLRFSPLFAELTDEIVPVALDVHVDMFYGTTASGTTASGLKCLDPLFFLLNPRPEYSIRVLDPVSTRGQSSYDVANFVQGEIG KVLGFQCTKLTRKDKYLVLAGNEGIHSRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10001449 [exp]	0	1
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10031063 [exp]	1.0	0.9721
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10024195 [exp]	2.0	0.9109
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039487 [exp]	2.4	0.9295
AT1G06930			unknown protein		Lus10034209 [exp]	3.2	0.8871
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10035445 [exp]	4.7	0.8804
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030518 [exp]	5.2	0.9134
AT1G11340			S-locus lectin protein kinase ...		Lus10030768 [exp]	6.0	0.8614
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Lus10018764 [exp]	7.4	0.9055
					Lus10037930 [exp]	7.9	0.8285
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10042392 [exp]	8.5	0.9025

Compare expression of checked genes

Lus10001449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.