Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02560 365 / 1e-126 NCLPP5, NCLPP1, CLPP5 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) AT1G66670 192 / 1e-58 NCLPP3, NCLPP4, CLPP3 CLP protease proteolytic subunit 3 (.1) AT5G23140 178 / 3e-54 NCLPP7, NCLPP2, CLPP2 nuclear-encoded CLP protease P7 (.1) AT5G45390 178 / 2e-53 NCLPP3, NCLPP4, CLPP4 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) AT1G11750 155 / 6e-45 NCLPP6, NCLPP1, CLPP6 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) ATCG00670 147 / 7e-43 PCLPP, ATCG00670.1, CLPP1 CASEINOLYTIC PROTEASE P 1, plastid-encoded CLP P (.1) AT1G12410 142 / 6e-40 EMB3146, CLP2, NCLPP2, CLPR2 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) AT1G09130 116 / 1e-29 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT4G17040 111 / 4e-28 HON5, CLPR4 happy on norflurazon 5, CLP protease R subunit 4 (.1) AT1G49970 97 / 3e-22 SVR2, NCLPP5, CLPR1 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002422 [exp] 570 / 0 AT1G02560 361 / 4e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10025022 [exp] 306 / 3e-103 AT1G02560 313 / 3e-107 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10010003 [exp] 304 / 1e-102 AT1G02560 308 / 2e-105 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10010196 [exp] 177 / 7e-54 AT5G23140 395 / 4e-141 nuclear-encoded CLP protease P7 (.1) Lus10017397 [exp] 176 / 3e-53 AT5G23140 394 / 1e-140 nuclear-encoded CLP protease P7 (.1) Lus10010979 [exp] 174 / 1e-51 AT1G66670 288 / 6e-97 CLP protease proteolytic subunit 3 (.1) Lus10000449 [exp] 172 / 6e-51 AT1G66670 285 / 1e-95 CLP protease proteolytic subunit 3 (.1) Lus10040981 [exp] 171 / 1e-50 AT5G23140 350 / 1e-122 nuclear-encoded CLP protease P7 (.1) Lus10007589 [exp] 169 / 4e-50 AT5G45390 293 / 2e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G119700 [exp] 380 / 4e-132 AT1G02560 493 / 6e-178 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.002G195200 [exp] 374 / 4e-130 AT1G02560 474 / 2e-170 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.004G092100 [exp] 199 / 6e-61 AT1G66670 441 / 2e-156 CLP protease proteolytic subunit 3 (.1) Potri.007G071700 [exp] 179 / 5e-54 AT5G23140 383 / 1e-135 nuclear-encoded CLP protease P7 (.1) Potri.005G092600 [exp] 177 / 7e-54 AT5G23140 380 / 3e-135 nuclear-encoded CLP protease P7 (.1) Potri.003G103300 [exp] 169 / 4e-50 AT5G45390 383 / 9e-135 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.009G114001 [exp] 162 / 1e-47 AT1G11750 353 / 2e-123 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.004G152900 [exp] 162 / 1e-47 AT1G11750 397 / 4e-141 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.001G115900 [exp] 142 / 5e-40 AT1G12410 408 / 3e-145 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) Potri.001G130601 [exp] 132 / 1e-36 AT5G45390 239 / 2e-79 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00574 [flax] [poplar] CLP_protease Clp protease
Representative CDS sequence Show only first row Show all	>Lus10001450 pacid=23161035 polypeptide=Lus10001450 locus=Lus10001450.g ID=Lus10001450.BGIv1.0 annot-version=v1.0 ATGGCTCATTACATGTCATTGGTTGTCCATGCCTTGCAGACGATGAGACGAACATGTCGAGACCTCCTTGATCTCTATGTTTTGGAGCTCATGGATGTTC GTGATGTTTGTGCTTGGTGTTTCCTACAGGTATTTGACAAGTGGACATCAAGAGCAATGCTAAGGTCATTCTCTCTCGATTCGCTCACCGGTGCAGGCGC TTTGGAGGCTACTATGTCTATGGCACACTCCTCAGTCTCCACTTCAGCAGGCCTCGGCTCTCTTGTCTTCTCCGCAAACCCTATCTCCTGTCCCAATCCT CGCAACCTTGCTCTTCCCTTCCGCCCTCTCACCACCTCCAGGAAATTGAGCAAGTTGGACAAAATCACTCTCCGGACTGCCGCTTACTCCACCTCCGAAC TGCCTGATACGAGCTCTCGCCGCGGACTATGGTCAATTAGGGATGATTTGGAAATCCCATCTTCGCCTTACTTCCCCACCCTTGCCAGCGGGGCTGAAGC TAAAGGACCGCGTTCCCCGCGGCTTGGCAATGTCATTAACCAGCTTTTTCAATATAGAATTATAAGATGCGGTGGACCCGTTGAGGACGATATGGCCAAC ATTATTGTTGCACAACTTCTGTATCTCGATGCAGTTGATCCTAACAAGGATATCATCATGTATGTCAACAGTCCAGGCGGATCAGTCACAGCTGGCATGG CAATTTTTGACACCATGAAGCATATCCGACCTGATGTCTCCACTATTTGTGTTGGACTTGCTGCTAGTATGGGAGCTTTTCTGCTTAGTTCTGGAACCAA AGGTAAAAGATACAGCCTGCCAAATTCGAGGATGATGATCCATCAACCTATTGGGGGAACTTCAGGTTCACAGACCGACTTTGCAAATCAGGTTAACGAG ATGTTGCATCATAAAAAGAACCTGAGTAGCTATCTAGCCTACCAAACTGGTCAAAGTTACGAGAAGGTGAACGAGGACACTGAACTCGATTACTTCATGG GAGCAGAGGAAGCGAAAGCATACGGACTTATCGACGATGTGATCGTTAGCCCTTTCAAGCTTTCTCTTAGTTAG
AA sequence Show only first row Show all	>Lus10001450 pacid=23161035 polypeptide=Lus10001450 locus=Lus10001450.g ID=Lus10001450.BGIv1.0 annot-version=v1.0 MAHYMSLVVHALQTMRRTCRDLLDLYVLELMDVRDVCAWCFLQVFDKWTSRAMLRSFSLDSLTGAGALEATMSMAHSSVSTSAGLGSLVFSANPISCPNP RNLALPFRPLTTSRKLSKLDKITLRTAAYSTSELPDTSSRRGLWSIRDDLEIPSSPYFPTLASGAEAKGPRSPRLGNVINQLFQYRIIRCGGPVEDDMAN IIVAQLLYLDAVDPNKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDVSTICVGLAASMGAFLLSSGTKGKRYSLPNSRMMIHQPIGGTSGSQTDFANQVNE MLHHKKNLSSYLAYQTGQSYEKVNEDTELDYFMGAEEAKAYGLIDDVIVSPFKLSLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10001450 [exp]	0	1
AT4G20130		PTAC14	plastid transcriptionally acti...		Lus10006942 [exp]	1.0	0.9680
AT3G06730		TRXz, TRXP ,TRX...	thioredoxin putative plastidic...		Lus10039499 [exp]	4.0	0.9356
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10023283 [exp]	4.5	0.9327
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10039049 [exp]	4.6	0.9292
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10013038 [exp]	5.7	0.9079
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10005668 [exp]	5.7	0.9405
AT1G55140			Ribonuclease III family protei...		Lus10037645 [exp]	6.5	0.9305
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10024297 [exp]	6.9	0.9362
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10039254 [exp]	10.0	0.9110
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10017349 [exp]	11.7	0.9079

Compare expression of checked genes

Lus10001450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.