Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02060 1169 / 0 MCM7, PRL PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT2G16440 333 / 1e-102 MCM4 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT5G46280 322 / 4e-99 MCM3 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT5G44635 320 / 1e-97 MCM6 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) AT1G44900 302 / 3e-90 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) AT2G07690 296 / 8e-90 MCM5 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT3G09660 255 / 4e-74 MCM8 minichromosome maintenance 8 (.1) AT2G14050 219 / 4e-62 MCM9 minichromosome maintenance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002427 [exp] 1418 / 0 AT4G02060 1223 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10038384 [exp] 327 / 4e-100 AT5G44635 1257 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10036244 [exp] 325 / 1e-99 AT5G44635 1262 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10025389 [exp] 323 / 4e-99 AT5G46280 1096 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10015267 [exp] 331 / 5e-99 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10017491 [exp] 322 / 1e-98 AT2G16440 1225 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10028795 [exp] 321 / 4e-98 AT2G16440 1255 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10009052 [exp] 297 / 4e-86 AT1G44900 1263 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10019592 [exp] 274 / 1e-81 AT2G07690 1075 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G121000 [exp] 1248 / 0 AT4G02060 1255 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.004G131600 [exp] 333 / 2e-103 AT5G46280 1123 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.001G074000 [exp] 334 / 7e-103 AT5G44635 1312 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.009G121500 [exp] 331 / 8e-102 AT2G16440 1236 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.018G112800 [exp] 308 / 2e-94 AT2G07690 1173 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.006G188700 [exp] 298 / 2e-90 AT2G07690 1170 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.001G070500 [exp] 297 / 3e-88 AT1G44900 1348 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.006G131900 [exp] 253 / 2e-73 AT3G09660 1037 / 0.0 minichromosome maintenance 8 (.1) Potri.019G014403 [exp] 215 / 2e-60 AT2G14050 989 / 0.0 minichromosome maintenance 9 (.1) Potri.003G157001 [exp] 79 / 9e-18 AT5G44635 0 / 1 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00493 [flax] [poplar] MCM MCM P-loop domain
Representative CDS sequence Show only first row Show all	>Lus10001452 pacid=23161030 polypeptide=Lus10001452 locus=Lus10001452.g ID=Lus10001452.BGIv1.0 annot-version=v1.0 ATGACGAAACGTCTGGACCTCACTGCCGACAAAGATTTCGCAAGGGAGTTTCTGAGTAACCACACTGACCTAAATGGCGAAGCTAAGTACATGAACATCC TTCAAGATGTTGCAAATCACAAGACTCGAGCTGTTCAAATTGACCTCGATGACCTATTTAACTGGACAACAGACTTTGACAATGAATTCTCTAAACGGGT TACTGAGAATACCCGACGATACATAGGGATATTTGCCTCTGCAATTGATGAACTGATGCCTGAACCCACCGAGACATTTCCAGATGATGACCATGACATC CTAATGACGCAGAGGTCTGAGGAGCCAAACGAGAACACTGATGGTTCTGATCAGCAGCAGAAGATGCCTCCTGAAATCAAGCGTTTCTACGAGGTTTATA TCAAAGCAGCTTCAAAGGACCAGAAGATGAGTATCAGAGAGGTCAAGGCTTCAAATATCGGCCACCTTGTGAAGATTTCTGGTATTGTGACACGTTGTTC AGATGTCAAGCCCCTGATGCAGGTTGCTGTGTATACCTGTGAAGAATGTGGTTTCGAAATATACCAGGAAGTAACTGCCCGGGTGTTCATGCCTTTGTTT AAATGCCCATCCAACCGATGTGTGACAAACAATAGAAATGGAAATCTTATTCTTCAACTCAGGGCATCTAAATTTCTAAAGTTTCAGGAGGCTAAAATTC AAGAGCTGGCAGAACATGTTCCAAAAGGCCATATTCCACGGTCCATGACGGTTCATTTTAGAGGGGAGCTGACTAGAAGGGTAGCACCTGGTGACGTAGT TGAATTGTCAGGAATCTTCCTTCCAATTCCTTACACTGGATTCAGAGCAATGCGTGCTGGCTTAGTTGCTGATACATACTTAGAGGTCATGTCAGCCACT CATTCCAAGAAAAGATACGAAGAGTATGAACAAGGAGGAGATGAGGAAGAACAGATTAGGAAGTTAGCTGAAGATGGTGACATATATAATAAGTTGGCAC GCTCTTTGGCACCTGAAATTTATGGTCATCAAGATATTAAGAAAGCTTTACTACTTCTCCTTGTTGGTGCTCCTCATAGGAAATTGAAGGATGGGATGAA GATCAGAGGAGATCTACATGTATGTCTTATGGGTGACCCTGGAGTGGCAAAAAGTCAGCTTCTAAAGCACATAATCAATGTAGCGCCCAGGGGAGTGTAC ACTACTGGAAAAGGAAGCAGTGGCGTTGGTCTAACTGCGGCTGTTCAGAGAGATCCAGTTACAAATGAAATGGTCTTGGAAGGCGGCGCTTTGGTGCTTG CTGATATGGGTATATGTGCCATTGATGAGTTTGACAAGATGGATGAATCAGATCGTACTGCAATTCATGAAGTTATGGAACAGCAGACTGTCAGCATTGC AAAAGCTGGGATCACCACTTCCCTTAATGCAAGAACTGCTGTTCTTGCTGCGGCTAATCCAGCATGGGGAAGATATGACATGCGGAGAAGCCCGGCTGAA AACATCAATTTACCTCCTGCTCTTCTATCAAGATTTGATCTCCTATGGTTGATTCTTGACCGAGCAGATATGGATGCGGATCTTGAAATGGCTAGGCATG TTGTTTATGTGCACCAGAACAAGAAATCTCCTGCTCTCGGATTTGCTCCTCTCGAACAATCTGTACTCCGTGCATATATTTCTGCTGCAAGAAGACTGTC GCCATACGTCCCCAAGGACCTCGAGGAGTATATCGCCACTGCATACTCCAGTATTCGGCAAGAAGAGGCCAAATCAAATGCTCCTCATTCGTATACTACC ATTCGAACCCTACTTAGCATTCTCCGGATATCAGCTGCCTTAGCAAGGCTCCGATTCTCAGAAACAGTGGCACAGAGCGATGTGGACGAGGCACTGAGAT TGATGCAAATGTCAAAATTCTCATTGTATTCCGATGAACGTAAGAAATCTGGTCTGGATGCCATCTCTGACATTTACTCAATATTGAGGGATGAAGCTGC AAGGGCCGGCAGAATGGATGTGAGCTATGCCGATGCTCTTAACTGGATTTCTAGAAAGGGTTACAGTGAGGCTCAGCTGAAAGAATGCTTAGAAGAATAT GCTGCTCTTAATGTCTGGCAGATTCACCACCGCACCTTTGACATCCGCTTCATCGATGCCTGA
AA sequence Show only first row Show all	>Lus10001452 pacid=23161030 polypeptide=Lus10001452 locus=Lus10001452.g ID=Lus10001452.BGIv1.0 annot-version=v1.0 MTKRLDLTADKDFAREFLSNHTDLNGEAKYMNILQDVANHKTRAVQIDLDDLFNWTTDFDNEFSKRVTENTRRYIGIFASAIDELMPEPTETFPDDDHDI LMTQRSEEPNENTDGSDQQQKMPPEIKRFYEVYIKAASKDQKMSIREVKASNIGHLVKISGIVTRCSDVKPLMQVAVYTCEECGFEIYQEVTARVFMPLF KCPSNRCVTNNRNGNLILQLRASKFLKFQEAKIQELAEHVPKGHIPRSMTVHFRGELTRRVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTYLEVMSAT HSKKRYEEYEQGGDEEEQIRKLAEDGDIYNKLARSLAPEIYGHQDIKKALLLLLVGAPHRKLKDGMKIRGDLHVCLMGDPGVAKSQLLKHIINVAPRGVY TTGKGSSGVGLTAAVQRDPVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDMRRSPAE NINLPPALLSRFDLLWLILDRADMDADLEMARHVVYVHQNKKSPALGFAPLEQSVLRAYISAARRLSPYVPKDLEEYIATAYSSIRQEEAKSNAPHSYTT IRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDERKKSGLDAISDIYSILRDEAARAGRMDVSYADALNWISRKGYSEAQLKECLEEY AALNVWQIHHRTFDIRFIDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10001452 [exp]	0	1
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	1.0	0.9867
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10012889 [exp]	1.4	0.9819
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	1.7	0.9814
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10004012 [exp]	3.5	0.9643
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10019592 [exp]	3.5	0.9768
AT1G27880			DEAD/DEAH box RNA helicase fam...		Lus10036983 [exp]	3.5	0.9558
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10026954 [exp]	3.9	0.9761
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027848 [exp]	4.7	0.9559
AT4G31400		CTF7	damaged DNA binding;DNA-direct...		Lus10021277 [exp]	5.2	0.9401
AT1G29630			5'-3' exonuclease family prote...		Lus10011991 [exp]	5.3	0.9545

Compare expression of checked genes

Lus10001452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.