Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02110 370 / 4e-108 transcription coactivators (.1) AT4G21070 54 / 6e-07 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT1G67180 53 / 1e-06 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) AT1G04020 52 / 3e-06 ROW1, ATBARD1, BARD1 breast cancer associated RING 1 (.1.2) AT4G14700 50 / 8e-06 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT1G77320 47 / 7e-05 MEI1 meiosis defective 1, transcription coactivators (.1.2) AT4G12620 47 / 9e-05 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1) AT3G01460 46 / 0.0002 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010017 [exp] 888 / 0 AT4G02110 365 / 3e-108 transcription coactivators (.1) Lus10025038 [exp] 838 / 0 AT4G02110 368 / 1e-109 transcription coactivators (.1) Lus10002431 [exp] 683 / 0 AT4G02110 184 / 2e-49 transcription coactivators (.1) Lus10002432 [exp] 458 / 2e-152 AT4G02110 240 / 7e-72 transcription coactivators (.1) Lus10034088 [exp] 68 / 4e-11 AT1G67180 250 / 2e-76 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) Lus10031848 [exp] 50 / 2e-05 AT4G14700 942 / 0.0 origin recognition complex 1 (.1) Lus10031846 [exp] 50 / 2e-05 AT4G14700 943 / 0.0 origin recognition complex 1 (.1) Lus10008495 [exp] 49 / 3e-05 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10031279 [exp] 49 / 4e-05 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G122400 [exp] 938 / 0 AT4G02110 382 / 4e-112 transcription coactivators (.1) Potri.002G197400 [exp] 854 / 0 AT4G02110 374 / 6e-110 transcription coactivators (.1) Potri.004G106000 [exp] 59 / 2e-08 AT1G67180 237 / 3e-72 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) Potri.001G358100 [exp] 52 / 3e-06 AT4G21070 649 / 0.0 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Potri.002G259000 [exp] 50 / 1e-05 AT1G04020 472 / 3e-156 breast cancer associated RING 1 (.1.2) Potri.005G182500 [exp] 50 / 1e-05 AT1G77320 1011 / 0.0 meiosis defective 1, transcription coactivators (.1.2) Potri.003G126600 [exp] 49 / 2e-05 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.012G018300 [exp] 47 / 6e-05 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.017G072460 [exp] 47 / 0.0001 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.015G009632 [exp] 45 / 0.0002 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10001455 pacid=23161037 polypeptide=Lus10001455 locus=Lus10001455.g ID=Lus10001455.BGIv1.0 annot-version=v1.0 ATGCAGGAAGCGATCACAAGTTCTTCATCGAAACCGTTCGTCGGCCTTCGCTTTCTTCTCCGTGGCTTCGACTCTATCAGCCAGCAGCAGGTTCGATCAA AGCTTCTGAGCGGCGGAGGAGTTGAGAGTCAGAACTATACTCATTTAATCGTCGACAACACTGCTTATGATGATCCGGAATGTGTTTCTGCTCGAAATAA CGGGAAGACAGTGGTCACGGGGTTGTGGGTCGACCACAGTTTTGATATTGGATTGGTTGTTGATCGAACTTCTATAATGTATCAACCTCCAAAAGATATC AATGGAATACCTGGTGCTGATAAACTGGTTGTGTGCTTGACGGGTTACCAGCGCCAAGATCGAGAAGACATCATGACTATGGTGAGTCTCATGGGTGCAC GATTTTCCAAGCCCTTGATTGCCAACAAAGTCACTCACCTCATATGCTATAAGTTTGAAGGCGTGGCTTACAAGGTCTTTCATTACAGCAAGGTACTTTT CAATGATCAATGCCCTTTGAAGATGTGCAATGTAGCTGAGTCTGCATTCCACGGTGAAAAGTACGAACTTGCAAGTAGGATTCAGAAGATAAAGCTTATC AATCATCGTTGGTTGGAAGATTGTTTGACGAATTGGAAGCTCCTCCCAGAAGATGACTATCATAAGAGTGGTTATGACTTAGAGATGATGGAAACTGAAG CAAAGGATTCTGAAGAGGATGTGACAGAAACTTCTCTTATGGTATCTACCGGTCATATTCCAAACCTGAGCCTTCGTAATATGGAAAATGGATCTCCAAA GATTGGCAACTTGTCAAAACCTATTCCTGAAAGTTCTGCAATGGTGGCTGGAGATTTGTATGCCCACAATGCCAATGAGGTGTTAAGAACTCCTGTCAAT AAGAAAAGGGGGGATATGGGCTGCAGTCCTGATAAGAATCATGCTTCTGATCTAATTGCTGCTCCATCAGAGAGAACTTCAGGTTCGGGGAACGGGGGTG GCAAGATGAACTCTGTTTCTAAACCTTCACTTTCTTATACCGATTCGCTTGCTATGAGTCATGACAGGAAAACTTCACAAAGGTCTCCGTCACTATTCAT TGGAGCATCAAAAGCTCCTGGATGCTATCCGAAAGTACAAACAGGGGAACCCATCAATTTCTCTTCTGCTAAAGTTGAAGTTGCAAACCAATGCCTTGGT TCTGGTTTTGAGGATTTCGAAAGATTAGTTTCTGAAGAGCTATCAGATGGTAAAAAGCAAAGGATAGATGCCTTAGAGTCTAGCTCAAAAAGCCATCAGA TGTTTCAGGATAGACAAACTTGGATCACAGGGAGTCCATCACTTAGCTATAGAGCTCTAGGATTGAAATCATCTTCTTTGGAAACTGCACCTAGGCTTAA CAATAGCTCTCCTGATGGTAGTTATGCTCAGTCTCACTCTGGTAAGGGTATATTAAGTTCGAATGGTGCTTCAAATAGCCATAGCATGTTAGCATTGAGA GAGCAATCACTAGCAGAAGGTGTCCCATTTGGTGAAAATGCAACAATGGAAAAAATAGGAAAGCAAAGTACTGATATGAAACACCAAGCGTCAGTGAGTG GATTGAAAGTGTCAAGCTCACCTTCTAAGCAGGACGATGAAGTTCTTTGCTTAGACAAATCTGAAGTTGTGGATCTTAGAAATCAGCAGGTGAGGGCCTC ACCGGTGGGTAAGATAGATATAACGACTGTGAAGCCTTCTGTGGTTACTGCAAATCAGAGGCAGGATAACAGCTTACAAACCAAACAAGAACGGAAGCAC ACTGCAACCAAGAAGACATTGGGAACTAGAATGAAACTGAAAAGTACTGTGAAAGAAAAGGGCTCCATTTATTTGAAAGAAAGCACCGCCCAGGAAGATG TGGCAACTGATCTACGCAGAAGAAATGACAGGACAGATGAAGAAAATCTGTTGATGGCCAAAGAGCTTGAAGACCCCCCTGCCGCTGTTGTTTCAATGGA AGGTACGGGAAATAAACTTGTCATTGATCTAAGGACTGATGTCCAATATGATATTGACTCTATGAATGATGAAACGGAGCCTCCAGATGATAAAGAGCAG CAAAGTGATGCTGTGTTGAAAGAAAGGATGGAAACAGGAGGTTTGGCAGGTAGCAGGGTAGAAAAAGAACCAGAAGAAGTCCGTCCTGTGGGGGGAAATT CTAATGTTTGTGAAGTGGATGGTGTTATGGAAGATCCACAAAAGAAAGATAACTCAATCTCAGAAGGAGATTGTATCTCAGAAGACGATGGTGATAAAAG GAAGAAAAGTATAAGCAAACGGCTAACTTCAATAAAGAGTGCGAGAACGGTTTCTAGTGGTGATGGTGAATCCAACTCTAGCAAAGCTGTGGAGGCTGAA GAGACTCATCTTCACACAGTTGACCAAACTGCGAAAAACACATCTGAGCCTAGTGCCGGAAGCTGTCCAAGTAGGAAAAAGCTATCCAGAAGAAGATCAA GGATCAGCATGGAAGCAGATAAGGAGAATACGGCTATCACCCAAGTACATAGAAGAGGGAAGATGACTGAAAAACATGTCGAATCATGCGAGGCAAGAAT GGACGATAATCAGGACGTTCTAGAAACCAAACCCCTTTCTGGAAAACTTGAGGATATTTCTACTAACGTGGTGAAGGAACCAGCGTGCTTTATTATGAGC GGACATAGACTGCAGAGGAAGGAGTTTCAGCAGGTTATAAGACGTTTGAAGGGAAAATCTTGCAGAGATTCTCACCAGTGGTCATACCAGGCAACTCATT TCATTGCTCCGGACCCACTCCGCAGAACAGAAAAGTTACTTGCTGCTGCTGCCTCTGGAAGGTGGATTCTGAAGACTGACTATCTGTCCGCATGCAGTCA GGCAGGGAAGTTTCTTCCTGAAGAGCCTTACGAATGGTACAAGAATGGCCTCAGTGAGGATGGAGCTATAAACTTGGAGGCCCCGAGGAAGTGGCGACTA CTAAGAGAGCGAACAGGTCATGGGGCATTTCATGGTATGCAGATTGTCATCTACGGGGAGTGCATTTCACCACCGTTGGAAACACTTAAACGTGCAGTGA AGGCTGGAGATGGAACCATACTAGCAACATCCCCTCCTTACTCGCGGTTCCTTGCCTCTGGGATCGACTATGCAATCGTAAGCCCCGGGATGCCACATGT GGATGTGTGGGTGCAAGAGTTCCTAAGGCTGGAGATACCGTGCATAGTAGCTGATTACTTGGTGGAGTACGTATGCAAGTCGGGGTATTCTTTGGAGAAA CATGTCCTCTTCGGCACCCAGAAATGGGCAGAGAAGTCGTTTAGCAACCTGATGAGGAAGGCGGAGGAGATAGTTGTGGAAAAGGCTGCAGCTTCAGCTT CAGAAGAAGGTGGTGGTGAGAGCTCCCAGGAAGATGTGGCTTGCCAGGTATGCGGGAGTAGGGATAGAGGTGAAGTAATGCTGCTGTGTGGGGATGAAAG TGGCAAAGTTGGGTGTGGGGGTGGAAGGCATATAGATTGCTGTGATCCTCCTCTTGACAGTATTCCTGAAGAAGATTGGTTCTGTCCAAACTGTTGCGAT GACAGTTTAAACCCTTGTTTAAAGACAAAGAAACGGAAGAAGGGGACAAAATGA
AA sequence Show only first row Show all	>Lus10001455 pacid=23161037 polypeptide=Lus10001455 locus=Lus10001455.g ID=Lus10001455.BGIv1.0 annot-version=v1.0 MQEAITSSSSKPFVGLRFLLRGFDSISQQQVRSKLLSGGGVESQNYTHLIVDNTAYDDPECVSARNNGKTVVTGLWVDHSFDIGLVVDRTSIMYQPPKDI NGIPGADKLVVCLTGYQRQDREDIMTMVSLMGARFSKPLIANKVTHLICYKFEGVAYKVFHYSKVLFNDQCPLKMCNVAESAFHGEKYELASRIQKIKLI NHRWLEDCLTNWKLLPEDDYHKSGYDLEMMETEAKDSEEDVTETSLMVSTGHIPNLSLRNMENGSPKIGNLSKPIPESSAMVAGDLYAHNANEVLRTPVN KKRGDMGCSPDKNHASDLIAAPSERTSGSGNGGGKMNSVSKPSLSYTDSLAMSHDRKTSQRSPSLFIGASKAPGCYPKVQTGEPINFSSAKVEVANQCLG SGFEDFERLVSEELSDGKKQRIDALESSSKSHQMFQDRQTWITGSPSLSYRALGLKSSSLETAPRLNNSSPDGSYAQSHSGKGILSSNGASNSHSMLALR EQSLAEGVPFGENATMEKIGKQSTDMKHQASVSGLKVSSSPSKQDDEVLCLDKSEVVDLRNQQVRASPVGKIDITTVKPSVVTANQRQDNSLQTKQERKH TATKKTLGTRMKLKSTVKEKGSIYLKESTAQEDVATDLRRRNDRTDEENLLMAKELEDPPAAVVSMEGTGNKLVIDLRTDVQYDIDSMNDETEPPDDKEQ QSDAVLKERMETGGLAGSRVEKEPEEVRPVGGNSNVCEVDGVMEDPQKKDNSISEGDCISEDDGDKRKKSISKRLTSIKSARTVSSGDGESNSSKAVEAE ETHLHTVDQTAKNTSEPSAGSCPSRKKLSRRRSRISMEADKENTAITQVHRRGKMTEKHVESCEARMDDNQDVLETKPLSGKLEDISTNVVKEPACFIMS GHRLQRKEFQQVIRRLKGKSCRDSHQWSYQATHFIAPDPLRRTEKLLAAAASGRWILKTDYLSACSQAGKFLPEEPYEWYKNGLSEDGAINLEAPRKWRL LRERTGHGAFHGMQIVIYGECISPPLETLKRAVKAGDGTILATSPPYSRFLASGIDYAIVSPGMPHVDVWVQEFLRLEIPCIVADYLVEYVCKSGYSLEK HVLFGTQKWAEKSFSNLMRKAEEIVVEKAAASASEEGGGESSQEDVACQVCGSRDRGEVMLLCGDESGKVGCGGGRHIDCCDPPLDSIPEEDWFCPNCCD DSLNPCLKTKKRKKGTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02110			transcription coactivators (.1...		Lus10001455 [exp]	0	1
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10004038 [exp]	4.0	0.9578
AT4G02110			transcription coactivators (.1...		Lus10010017 [exp]	5.3	0.9489
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10002857 [exp]	6.2	0.9546
AT1G26330			DNA binding (.1.2)		Lus10000645 [exp]	6.5	0.9541
AT4G22970		RSW4, AESP	RADIALLY SWOLLEN 4, homolog of...		Lus10006990 [exp]	7.3	0.9441
AT4G02110			transcription coactivators (.1...		Lus10002431 [exp]	8.6	0.9236
AT5G53480			ARM repeat superfamily protein...		Lus10034318 [exp]	8.9	0.9349
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039167 [exp]	11.8	0.9456
AT1G04650			unknown protein		Lus10023676 [exp]	11.9	0.9054
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Lus10010010 [exp]	15.0	0.9440

Compare expression of checked genes

Lus10001455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.