Plant FIBer expression Database

Lus10001456 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G38700 85 / 6e-21 unknown protein
AT4G02170 82 / 6e-20 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010019
[exp]
125 / 2e-36 AT5G38700 164 / 8e-52 unknown protein
Lus10025041
[exp]
121 / 7e-35 AT5G38700 150 / 2e-46 unknown protein
Lus10002433
[exp]
100 / 2e-27 AT5G38700 69 / 7e-16 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G198800
[exp]
93 / 7e-24 AT5G38700 157 / 3e-49 unknown protein
Potri.014G123400
[exp]
85 / 9e-21 AT5G38700 144 / 4e-44 unknown protein
PFAM info
Representative CDS sequence
>Lus10001456 pacid=23161026 polypeptide=Lus10001456 locus=Lus10001456.g ID=Lus10001456.BGIv1.0 annot-version=v1.0
ATGGGTAAGAAAGACGAGACCATTAATGTGGCTAACCGGGCGTGGAATGTGCTCCGCTTAGCTTTGATATCGGCCCGAAAAGGCGGTGTCTTGAGGAGAC
GGTTGGTGACAGACCTCCGGCTAGTTCCCAAGTTCATCAAAAGCTTAAGACCTGCTACTACTCCTTCTCATCATCAGAAAATTGGTAATTTCTACGGAGA
ACGGCAGTTTTCGTTCGAGAAAACCCCTCTTTTCGACTTCAAGATGCACCATCGTCGCCCTGCAGCTTCCTTGCGCTTCATATTCCCCTGCATTGCTCCC
AGATGCCCTGCTGATTCTTTTGACTTTGACGATTGTGATTACCTCCACGAGGAATGCACCGTTGATGACGTTGTAGAGGAGGAGGATGAGGAATTTGAAG
AGCAATCTGGGGAGGGGAGTTCATTTGATTCAAGCTCAGAAGATGATTATGAGGAGGAGGAAAGTGAAGGGGTGGACTTGAGAGCTGACAAGTTCATTGC
TCAATTCTACCAACAGATGAAGCTACAGAGACAAATTTCATACTTAGAGTACCACAAATGA
AA sequence
>Lus10001456 pacid=23161026 polypeptide=Lus10001456 locus=Lus10001456.g ID=Lus10001456.BGIv1.0 annot-version=v1.0
MGKKDETINVANRAWNVLRLALISARKGGVLRRRLVTDLRLVPKFIKSLRPATTPSHHQKIGNFYGERQFSFEKTPLFDFKMHHRRPAASLRFIFPCIAP
RCPADSFDFDDCDYLHEECTVDDVVEEEDEEFEEQSGEGSSFDSSSEDDYEEEESEGVDLRADKFIAQFYQQMKLQRQISYLEYHK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G38700 unknown protein Lus10001456
[exp]
0 1
AT1G64700 unknown protein Lus10008274
[exp]
1.0 0.9700
AT5G22250 AtCAF1b CCR4- associated factor 1b, Po... Lus10034180
[exp]
2.8 0.9611
AT1G12610 AP2_ERF DDF1, DREB1F, F... DWARF AND DELAYED FLOWERING 1,... Lus10006334
[exp]
4.5 0.9475
AT1G06450 Polynucleotidyl transferase, r... Lus10035078
[exp]
5.2 0.9549
AT1G70090 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE... Lus10010727
[exp]
5.2 0.9398
Lus10034192
[exp]
5.5 0.9437
AT1G12610 AP2_ERF DDF1, DREB1F, F... DWARF AND DELAYED FLOWERING 1,... Lus10001871
[exp]
6.3 0.9399
AT5G38700 unknown protein Lus10002433
[exp]
6.9 0.9491
AT1G06450 Polynucleotidyl transferase, r... Lus10000327
[exp]
7.0 0.9418
AT1G12610 AP2_ERF DDF1, DREB1F, F... DWARF AND DELAYED FLOWERING 1,... Lus10006332
[exp]
8.4 0.9342

Lus10001456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.