Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25920 221 / 2e-71 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002434 [exp] 482 / 2e-174 AT2G25920 225 / 4e-73 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G198400 [exp] 268 / 5e-90 AT2G25920 238 / 3e-78 unknown protein Potri.014G122900 [exp] 259 / 8e-87 AT2G25920 238 / 3e-78 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001457 pacid=23161033 polypeptide=Lus10001457 locus=Lus10001457.g ID=Lus10001457.BGIv1.0 annot-version=v1.0 ATGGGGTCGGATCCGAATCCGGCAGCGTCTCCGTCTTCATCGCCGTCACGGTCTTCAAATGGGAAGCGACCACGAGACCGTGAAGACGAGGTCTATCTCG ACAATCTACACAATTCCAAGCGCTACCTGAGCGAGATGATGGCATCTAGCCTGAATGGATTGACAGTAGGGGACTCGCTTCCTGAGAATCTTATGGACTC TCCGGCAAGGTCTGATGGCTTTTATTACTTCAGGGATGAAACGCCATTGCAGCAGTATTCACCAATGTCAGAAGACTCGGACGACTCCAGATTCTGCGAG ACTCCTCCAGGAACTACCTGCTCATCACAGCCTGAAAGTGTTCCCACTAGCCCGGTATCTCCATACCGGTACCAAAGACCACTCAGCGGGTTCTCATGCG CAGGCTCAGCATCCATCGCACATTCATTACACAGCTGTGTGGCAAGCACCCAGTCGCGCCAACCTCGGGGTTCATCAGATTCAGAGGGTCGGTTCCCGTC GTCTCCAAGTGACATTTGTCACTCAGCCGACTTGAGGAGGGCTGCACTGCTGCGGTCTGTGCAGATGAGAACACAACCTCCTGGACCATCATCGTCCTAT GAATCGACATATGGGGAACAAGAGCTTCCTGCGCCAAATATGGAGACCGAGGAGGACCGCTCATGTTTGTATATGAAGAACATGGTTGATGTTGATGAGA GGGGGTATCAAATCGAGGATTGTTCTCCGATGAGAATGTCAGAACCTGATCTTGACGAAGAAGCTAAATCGTTGTGTACTGTGTCAAATGGTAAAGTGAA AGCAAAGCAGCCTACAACAAGCTGA
AA sequence Show only first row Show all	>Lus10001457 pacid=23161033 polypeptide=Lus10001457 locus=Lus10001457.g ID=Lus10001457.BGIv1.0 annot-version=v1.0 MGSDPNPAASPSSSPSRSSNGKRPRDREDEVYLDNLHNSKRYLSEMMASSLNGLTVGDSLPENLMDSPARSDGFYYFRDETPLQQYSPMSEDSDDSRFCE TPPGTTCSSQPESVPTSPVSPYRYQRPLSGFSCAGSASIAHSLHSCVASTQSRQPRGSSDSEGRFPSSPSDICHSADLRRAALLRSVQMRTQPPGPSSSY ESTYGEQELPAPNMETEEDRSCLYMKNMVDVDERGYQIEDCSPMRMSEPDLDEEAKSLCTVSNGKVKAKQPTTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25920			unknown protein		Lus10001457 [exp]	0	1
AT5G05230			RING/U-box superfamily protein...		Lus10029029 [exp]	7.5	0.6982
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10007291 [exp]	9.8	0.7133
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002880 [exp]	10.6	0.7202
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10022150 [exp]	11.7	0.7240
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10028309 [exp]	14.7	0.6868
AT2G45590			Protein kinase superfamily pro...		Lus10036534 [exp]	18.0	0.7129
AT5G10660			calmodulin-binding protein-rel...		Lus10042442 [exp]	36.5	0.6077
					Lus10000293 [exp]	37.0	0.6112
AT3G57120			Protein kinase superfamily pro...		Lus10016113 [exp]	40.5	0.6566
AT5G14620		DMT7, DRM2	domains rearranged methyltrans...		Lus10032136 [exp]	41.0	0.7086

Compare expression of checked genes

Lus10001457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.