Plant FIBer expression Database

Lus10001459 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G02870 272 / 3e-94 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002436
[exp]
315 / 4e-111 AT1G02870 213 / 9e-71 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G130400
[exp]
289 / 7e-101 AT1G02870 280 / 4e-97 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09420 Nop16 Ribosome biogenesis protein Nop16
Representative CDS sequence
>Lus10001459 pacid=23161038 polypeptide=Lus10001459 locus=Lus10001459.g ID=Lus10001459.BGIv1.0 annot-version=v1.0
ATGGGTGGATCGAGGAGGAGGCTCAAGCGATCTCGGGCGAAGGTGCAAGTTGGACTACCGAGGAAGAACCCTAACATATTCAAGCCGGCTTTCAACCTTC
CTCCAAAGTTCCGCCGCTCTCTGGCCGAAGCCGGCGACGACATCTCAAATTGGGACGACAAGGCTAGCGTCATCCACAACTACAAGACTTTTGGCGTTGT
CTCTAACCCTAATTTGCTCAGCGTCCGCTCTCGCACTTCCCACATCATCGAGAATCAATCTCTCCAAACCCCTCCCCCTGAATCCGACGCCCCCCTTGAC
GAGTTTGAGACTTTTGACTCCGGCAGCGACCTCGAAGAAGACGACTTGAAATCAGCTCTTGGGAAGCAAAGAAAAGATGGGAAAAGTGCCCCTTTGCAGC
CATTGACCACCATGCAAAGATACCATACCAGTCGGCTGATTGAGAAATATGGAAATGACTACCAGAGGATGTTTATGGACACGAAACTGAACTCAATGCA
GCATTCTGTTGCAGCACTGGAGAAATTGTGCATGAGATATCAAATGTACAAGGATAAAAATCCCATGCTTGTAACTTAA
AA sequence
>Lus10001459 pacid=23161038 polypeptide=Lus10001459 locus=Lus10001459.g ID=Lus10001459.BGIv1.0 annot-version=v1.0
MGGSRRRLKRSRAKVQVGLPRKNPNIFKPAFNLPPKFRRSLAEAGDDISNWDDKASVIHNYKTFGVVSNPNLLSVRSRTSHIIENQSLQTPPPESDAPLD
EFETFDSGSDLEEDDLKSALGKQRKDGKSAPLQPLTTMQRYHTSRLIEKYGNDYQRMFMDTKLNSMQHSVAALEKLCMRYQMYKDKNPMLVT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G02870 unknown protein Lus10001459
[exp]
0 1
AT3G55280 RPL23A2, RPL23A... RIBOSOMAL PROTEIN L23A2, ribos... Lus10040316
[exp]
1.4 0.9140
AT3G51010 unknown protein Lus10026320
[exp]
1.4 0.8902
AT5G60030 unknown protein Lus10023334
[exp]
4.0 0.8586
AT4G01560 MEE49 maternal effect embryo arrest ... Lus10007860
[exp]
7.1 0.8560
AT2G35790 unknown protein Lus10040379
[exp]
7.5 0.8789
AT4G39880 Ribosomal protein L23/L15e fam... Lus10024048
[exp]
8.7 0.8246
AT1G02870 unknown protein Lus10002436
[exp]
9.2 0.8338
AT3G10920 MSD1, MEE33, AT... MATERNAL EFFECT EMBRYO ARREST ... Lus10012883
[exp]
14.3 0.8287
AT5G67630 P-loop containing nucleoside t... Lus10019267
[exp]
14.4 0.8452
AT2G37270 ATRPS5B ribosomal protein 5B (.1.2) Lus10004113
[exp]
15.7 0.8531

Lus10001459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.