Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36690 136 / 4e-37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 122 / 4e-32 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 121 / 9e-32 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G44800 119 / 9e-31 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 117 / 2e-30 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G22880 110 / 1e-27 TT18, TDS4, ANS, LDOX TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) AT3G60290 110 / 2e-27 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59530 107 / 2e-26 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G19590 105 / 4e-26 ATACO1, ACO1 ACC oxidase 1 (.1) AT2G30830 106 / 5e-26 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018949 [exp] 430 / 3e-152 AT2G44800 148 / 1e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10018950 [exp] 427 / 3e-151 AT3G60290 147 / 3e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011263 [exp] 183 / 4e-57 AT4G25420 50 / 2e-07 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 147 / 2e-41 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001711 [exp] 139 / 3e-39 AT2G36690 204 / 3e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014398 [exp] 132 / 2e-35 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023890 [exp] 130 / 6e-35 AT2G36690 486 / 5e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035782 [exp] 119 / 5e-31 AT5G24530 258 / 4e-84 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10028678 [exp] 119 / 6e-31 AT1G77330 435 / 1e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G185000 [exp] 354 / 3e-122 AT2G36690 147 / 5e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G048700 [exp] 200 / 9e-62 AT2G36690 255 / 3e-82 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G048900 [exp] 200 / 2e-61 AT2G36690 250 / 5e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 148 / 1e-41 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G029700 [exp] 145 / 2e-40 AT2G36690 478 / 1e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G106700 [exp] 144 / 4e-40 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 143 / 5e-40 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451600 [exp] 140 / 7e-39 AT4G10500 406 / 5e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G231500 [exp] 140 / 2e-38 AT2G36690 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 138 / 4e-38 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10001460 pacid=23161034 polypeptide=Lus10001460 locus=Lus10001460.g ID=Lus10001460.BGIv1.0 annot-version=v1.0 ATGGTTCAAATAGAAGCAGTTGTGATGGATGGACAAGTTCCAACCATAGACTACTTCTCCCTTTTCTCTACTGACCATGCCCAGCGATCCGCAGCCCTTG CATGCCTCTCAACTACGTGCAGAGATTACGGGTTCTTCAACTTGGTGAACCATGGGATTCCAGACGGAGTGATAGAAAGTGCACTGAGCAGCATTGGAGA ATTTTACGACAGCGTAGAGCTGCAAGAAAAGAACAAGTATAGTAGAGGAGATCCGGCAGCTAAGGTTCTTTGGGATGGTAGATACCACGGTGGTGCTATC GCTAGGGAGCATCTCAAGCTACTTGCACGTCCCGAACTCCATTGCCCTCCTAATCATCCTTCTGTTAGGGAGAGCATGGATGATTTCCAGACCAGATTCC ATCAAGTGAAGCTAGGGTTGGCAAGGGCTATGTCTGTAATATTGGGACAGAGAGAATCCTACATTGAGACAGCTTTGAATCTGGAATCAGGGTTTGACGT TGTAGCAAACAATAGTTACCCACCAAATTCAAACTCAAACGGCACAACTAGACTCCCTGAACATACCGATCCAGGCTTCATCATCTCCCTTATTCAAGAC ATGGATGGTGGCCTTCAAATCCTAACTCACCAAGGAAAATGGATCAACATCCGCATCCCTCCCAATGGTATCTTAATTCAACTTGGGGATCATCTCGAAA TTCTGACTAATGGAAAGTACAAGAGTCACATTCATCGAGCGATGATACATAACTATAAAGTAAGAAGGATCTCTATAGCCACACTCCATGGACCATCTAT TGGCACATTTGTAGCTCCGGCGCCGGAATTCGTTGATGATTCCCATCCTTCAGCTTACCGTGGAATGACCTACTCGGAATTCCTGAAAGGCAACAATTGT TACGAGATTGAAGTCCAATCATGCCTCGATCAAATTAGGCTTCTACCCAAAATAGAATAG
AA sequence Show only first row Show all	>Lus10001460 pacid=23161034 polypeptide=Lus10001460 locus=Lus10001460.g ID=Lus10001460.BGIv1.0 annot-version=v1.0 MVQIEAVVMDGQVPTIDYFSLFSTDHAQRSAALACLSTTCRDYGFFNLVNHGIPDGVIESALSSIGEFYDSVELQEKNKYSRGDPAAKVLWDGRYHGGAI AREHLKLLARPELHCPPNHPSVRESMDDFQTRFHQVKLGLARAMSVILGQRESYIETALNLESGFDVVANNSYPPNSNSNGTTRLPEHTDPGFIISLIQD MDGGLQILTHQGKWINIRIPPNGILIQLGDHLEILTNGKYKSHIHRAMIHNYKVRRISIATLHGPSIGTFVAPAPEFVDDSHPSAYRGMTYSEFLKGNNC YEIEVQSCLDQIRLLPKIE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10001460 [exp]	0	1
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021048 [exp]	4.9	0.8124
AT4G30420			nodulin MtN21 /EamA-like trans...		Lus10023211 [exp]	11.7	0.8241
AT1G06990			GDSL-like Lipase/Acylhydrolase...		Lus10042245 [exp]	15.2	0.7453
					Lus10011712 [exp]	15.3	0.7212
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10004988 [exp]	19.0	0.7469
AT3G03000			EF hand calcium-binding protei...		Lus10004610 [exp]	23.2	0.7018
AT3G08980			Peptidase S24/S26A/S26B/S26C f...		Lus10004822 [exp]	26.5	0.7063
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10016144 [exp]	43.0	0.7797
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10037309 [exp]	50.4	0.7692
					Lus10025590 [exp]	52.2	0.6949

Compare expression of checked genes

Lus10001460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.