Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62660 376 / 1e-130 GATL7 galacturonosyltransferase-like 7 (.1) AT1G02720 345 / 1e-118 GATL5 galacturonosyltransferase 5 (.1.2) AT4G02130 337 / 1e-115 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT1G70090 253 / 5e-82 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT3G28340 234 / 5e-75 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT1G24170 229 / 9e-73 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G06260 219 / 3e-69 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT1G13250 202 / 4e-63 GATL3 galacturonosyltransferase-like 3 (.1) AT3G50760 199 / 1e-61 GATL2 galacturonosyltransferase-like 2 (.1) AT1G19300 187 / 4e-57 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002440 [exp] 485 / 1e-172 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10000262 [exp] 404 / 1e-141 AT3G62660 405 / 2e-141 galacturonosyltransferase-like 7 (.1) Lus10010025 [exp] 408 / 1e-132 AT3G62660 568 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10010727 [exp] 238 / 1e-76 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10030821 [exp] 238 / 4e-76 AT1G70090 533 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10013296 [exp] 235 / 2e-74 AT1G70090 534 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10029215 [exp] 233 / 2e-74 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10012765 [exp] 224 / 2e-71 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10034012 [exp] 222 / 1e-70 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G200200 [exp] 391 / 9e-137 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.014G125000 [exp] 384 / 8e-134 AT3G62660 596 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.010G038300 [exp] 249 / 1e-80 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.008G192600 [exp] 225 / 2e-71 AT1G70090 556 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.008G116900 [exp] 224 / 2e-71 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.010G129400 [exp] 220 / 6e-70 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G018100 [exp] 211 / 2e-66 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.007G031700 [exp] 209 / 1e-65 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.014G040300 [exp] 204 / 3e-63 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.005G128000 [exp] 203 / 5e-63 AT3G50760 463 / 9e-165 galacturonosyltransferase-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10001461 pacid=23161028 polypeptide=Lus10001461 locus=Lus10001461.g ID=Lus10001461.BGIv1.0 annot-version=v1.0 ATGCTCTGGATTATGCGCTTCTCCGGCTTCGTCTCCGCCGCAATGGCCATGATTATCCTCGCCCCTTCCTTACAATCCTCTGCTCCAGCTGAGGCAATCC GTTCCTCTCACCTTGACCTCCGCTTCCCTGCTGCGGCGGTACCTCCCGATTCTCACCGGCGCCGTTTCTCCTTCCGTGAGGCCTCCGTGTTCCGCAATGC CGACGAATGTAGCTCCTCTAACCTCCGGAAAAACGGCGTCTGCGATTCTTCCTTGGTTCACGTCGCGATTACGCTCGACGTCGAGTACCTTCGAGGCTCA ATCGCTGCGGTCCACTCCATTCTGCAGCACTCGATGTGTCCAGAGAGCGTGTTCTTCCACTTCCTGATCTCGGAGACTAATCTAGAAACCCTAGTCCGCT CTACTTTCCCCAAATTGAAGTTCAAGGTGTATGACTTCAATCCGGAGATTGTACGGAGCCTAATATCGACTTCCGTGAGGCAGGCGCTCGAGCAGCCGCT CAATTACGCTAGGAATTACCTCGCCGATCTACTGGAGCCTTGCGTCCGCAGAGTAATTTACCTGGATTCCGATTTAGTAGTCGTCGACGACATTGCTAAG CTGTGGACGACTAGCTTGGGTTCGAAGACGATCGGGGCGCCGGAGTATTGCCACGCCAACTTCAGCAAGTACTTCACGGCGAGGTTCTGGTCGGAGAAGA GGTACTCGGCGACGTTCGACCGCCGGACGGAGTGCTACATCAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGTGCCCGCTGGATGCACTTTGGGCGCCATACGATCTGTACGGACACTCTCAGTGATTCAA TCAGAGGTTCGTCGCCGGTAA
AA sequence Show only first row Show all	>Lus10001461 pacid=23161028 polypeptide=Lus10001461 locus=Lus10001461.g ID=Lus10001461.BGIv1.0 annot-version=v1.0 MLWIMRFSGFVSAAMAMIILAPSLQSSAPAEAIRSSHLDLRFPAAAVPPDSHRRRFSFREASVFRNADECSSSNLRKNGVCDSSLVHVAITLDVEYLRGS IAAVHSILQHSMCPESVFFHFLISETNLETLVRSTFPKLKFKVYDFNPEIVRSLISTSVRQALEQPLNYARNYLADLLEPCVRRVIYLDSDLVVVDDIAK LWTTSLGSKTIGAPEYCHANFSKYFTARFWSEKRYSATFDRRTECYINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPAGCTLGAIRSVRTLSVIQ SEVRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10001461 [exp]	0	1
AT5G64950			Mitochondrial transcription te...		Lus10004329 [exp]	3.7	0.8681
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Lus10019360 [exp]	5.0	0.8484
AT4G33760			tRNA synthetase class II (D, K...		Lus10035657 [exp]	6.2	0.8561
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10013124 [exp]	9.1	0.8598
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Lus10002560 [exp]	9.9	0.8333
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10034458 [exp]	15.0	0.8365
AT3G23940			dehydratase family (.1.2)		Lus10033370 [exp]	15.5	0.8376
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10041573 [exp]	16.7	0.8530
AT1G50380			Prolyl oligopeptidase family p...		Lus10015387 [exp]	18.2	0.8400
AT1G01300			Eukaryotic aspartyl protease f...		Lus10030246 [exp]	18.6	0.8270

Compare expression of checked genes

Lus10001461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.