Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47490 382 / 6e-134 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) AT1G25380 316 / 8e-107 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT5G66380 155 / 7e-45 ATFOLT1 folate transporter 1 (.1) AT5G46800 123 / 8e-33 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT4G26180 113 / 7e-29 Mitochondrial substrate carrier family protein (.1) AT5G48970 110 / 7e-28 Mitochondrial substrate carrier family protein (.1) AT5G56450 108 / 3e-27 PM-ANT Mitochondrial substrate carrier family protein (.1) AT4G01100 108 / 9e-27 ADNT1 adenine nucleotide transporter 1 (.1.2) AT3G51870 107 / 2e-26 Mitochondrial substrate carrier family protein (.1) AT4G32400 106 / 7e-26 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034104 [exp] 337 / 7e-116 AT1G25380 414 / 3e-145 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10003041 [exp] 242 / 5e-80 AT1G25380 299 / 6e-102 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10000906 [exp] 117 / 1e-30 AT5G46800 482 / 1e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Lus10028339 [exp] 116 / 1e-30 AT5G66380 384 / 2e-135 folate transporter 1 (.1) Lus10032522 [exp] 119 / 3e-30 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 119 / 6e-30 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10008572 [exp] 115 / 2e-29 AT4G26180 494 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10032690 [exp] 115 / 2e-29 AT4G26180 493 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10002902 [exp] 115 / 5e-29 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G200900 [exp] 431 / 5e-153 AT2G47490 471 / 1e-168 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.014G125600 [exp] 410 / 1e-144 AT2G47490 448 / 1e-159 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.010G121500 [exp] 355 / 4e-122 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.008G123700 [exp] 331 / 7e-113 AT1G25380 417 / 8e-146 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.007G019000 [exp] 146 / 2e-41 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.008G210000 [exp] 121 / 9e-32 AT5G48970 517 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.010G024100 [exp] 114 / 3e-29 AT5G48970 528 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.006G153600 [exp] 112 / 2e-28 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 112 / 1e-27 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.006G252100 [exp] 110 / 1e-27 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10001463 pacid=23161044 polypeptide=Lus10001463 locus=Lus10001463.g ID=Lus10001463.BGIv1.0 annot-version=v1.0 ATGGGGAGTAGCAATGAATCTCATGCCCTTACTTTGAAAGGTCTTATCTCCAATGCAGGTGCTGGTGCAGCTGCAGGAATCATTGCTGCGACGTTTGTTT GTCCGTTAGATGTCATCAAAACACGATTTCAAGTCCACGGTCTCCCACAGCTCAATCATGATGCTAAGTTTAAACGTAATCTGATAGCAGGGAGTTTGGA ACATATATTCAGAAAGGAAGGTGTACCTGGAATGTATCGTGGGCTTGCAGCTACAGTTCTGGCCTTACTTCCTAATTGGGCCATCTATTTTACAGTGTAC GAACAACTCAAAGGCCTTCTCAAGTCCCCTGATGAGAATCATCATCTATCACTGGGTGCAAATATGATAGCTGCATCAGGAGCTGGGGTAACAACAACTC TTTTCACAAATCCTCTCTGGGTTGTTAAGACGAGACTTCAAGCTCAAGGATCAAAGGGAGGTGTTATTCCGTATAAGAACACTTTATCTGCTTTGAAGAG AATAGCCGGCGAGGAAGGTCTTCGCGGGTTATATAGTGGTCTTGTACCTGCTCTAGCGGGGATAAGTCATGTCGCAATACAATTTCCTACGTACGAGAAG ATCAAAGTCTATTTAACTGAAAAAGACAATACGACAGTTGACAAGTTGGGGGCACGTGACGTGGCTATTGCTTCTTCAATATCCAAAATATTTGCCTCCA CCTTGACATATCCACATGAGGTTGTGCGTTCGAGGCTTATGGAACAAGGCCTTCATTCTACACAACGTTATACAGGCGTGATCGACTGTTTACGGAAAAT GTACGAAAAAGAAGGAATTGTTGGATTTTACAGAGGGTGTGGGATTAATCTTTTGAGGACAACACCCGCAGCTGTTATCACCTTCACAAGCTTCGAAATG ATACATAGATTTCTTCTTACTGCTTTACCTCCTGGCCCAACAACAACATGA
AA sequence Show only first row Show all	>Lus10001463 pacid=23161044 polypeptide=Lus10001463 locus=Lus10001463.g ID=Lus10001463.BGIv1.0 annot-version=v1.0 MGSSNESHALTLKGLISNAGAGAAAGIIAATFVCPLDVIKTRFQVHGLPQLNHDAKFKRNLIAGSLEHIFRKEGVPGMYRGLAATVLALLPNWAIYFTVY EQLKGLLKSPDENHHLSLGANMIAASGAGVTTTLFTNPLWVVKTRLQAQGSKGGVIPYKNTLSALKRIAGEEGLRGLYSGLVPALAGISHVAIQFPTYEK IKVYLTEKDNTTVDKLGARDVAIASSISKIFASTLTYPHEVVRSRLMEQGLHSTQRYTGVIDCLRKMYEKEGIVGFYRGCGINLLRTTPAAVITFTSFEM IHRFLLTALPPGPTTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Lus10001463 [exp]	0	1
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004786 [exp]	1.7	0.9596
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10000231 [exp]	2.8	0.9251
AT3G52740			unknown protein		Lus10020614 [exp]	3.5	0.9344
					Lus10016100 [exp]	6.6	0.9238
AT2G15020			unknown protein		Lus10026592 [exp]	6.9	0.9197
AT5G35970			P-loop containing nucleoside t...		Lus10024974 [exp]	7.1	0.9244
AT3G18430			Calcium-binding EF-hand family...		Lus10042708 [exp]	7.1	0.9312
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10015138 [exp]	8.0	0.9327
AT1G79510			Uncharacterized conserved prot...		Lus10001766 [exp]	8.1	0.9311
AT1G72030			Acyl-CoA N-acyltransferases (N...		Lus10021995 [exp]	8.5	0.9246

Compare expression of checked genes

Lus10001463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.