Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02320 280 / 1e-88 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02300 277 / 1e-87 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 252 / 3e-77 ATPME2 pectin methylesterase 2 (.1) AT3G14310 242 / 2e-73 ATPME3 pectin methylesterase 3 (.1) AT5G53370 218 / 2e-64 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G49220 218 / 2e-64 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26440 211 / 4e-62 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 211 / 4e-62 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33220 202 / 5e-59 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) AT1G23200 200 / 7e-58 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008203 [exp] 363 / 7e-121 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10037458 [exp] 258 / 6e-81 AT3G14310 491 / 2e-170 pectin methylesterase 3 (.1) Lus10039314 [exp] 257 / 2e-79 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10013344 [exp] 251 / 4e-77 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10003933 [exp] 246 / 7e-75 AT3G14310 733 / 0.0 pectin methylesterase 3 (.1) Lus10020677 [exp] 207 / 9e-61 AT3G05620 681 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029868 [exp] 207 / 1e-60 AT3G05620 684 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10017375 [exp] 202 / 8e-60 AT3G43270 525 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10010170 [exp] 208 / 5e-59 AT3G43270 628 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202500 [exp] 429 / 2e-146 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051400 [exp] 259 / 5e-80 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.003G072800 [exp] 254 / 2e-78 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.001G162400 [exp] 253 / 1e-77 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.012G014500 [exp] 238 / 7e-72 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134600 [exp] 223 / 8e-67 AT2G26440 683 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G002800 [exp] 223 / 3e-66 AT3G14310 592 / 0.0 pectin methylesterase 3 (.1) Potri.010G109400 [exp] 220 / 1e-65 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G002650 [exp] 211 / 5e-62 AT3G14310 598 / 0.0 pectin methylesterase 3 (.1) Potri.006G256700 [exp] 208 / 7e-61 AT3G14310 587 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10001466 pacid=23161036 polypeptide=Lus10001466 locus=Lus10001466.g ID=Lus10001466.BGIv1.0 annot-version=v1.0 ATGTACAATCTCACCAAATTACTAGCTCTTCTTCCAATCTCCCTCTTCTTGCTAGCCACATTCCTCTTCCTCCACCGTCCCATCTTCACCCCATCTCACA TTAATCCAAACACCAAACCCACAAAACTCCCTCAGCTGCATTTCTACAAACACCTTGACAGCATCAACTCTGCCTGCGATGGCACGCTCTACCCTGACCT CTGCGTCTCCACTCTCCTCTCCTCCTTCCCTGGCCGCCTCACTTTCAGCTCCAAATCCAGATCCATCCCCAAACTTATTACCGCCACTCTCAACCGGACC ATGTCCGAGGTCCGAGCCTCCTCCTCCAACTGCTCCCGCATCCAGCGCACTTACATCCATAGCCACCTCGACCGGGTAGCCCTCGCAGACTGTCTCGAGC TGCTCGACGACTCCATGTCCGATATCCTGATCTCCATGTCGGATCTCAAGCACATGAAGTCCATCCCTAGGCATTACAATGACATGAGGACGCTTCTCAG TGCCGCGATTACCAATCAGTTTACTTGCCTGGACGGGTTTGCTTACAGCAGGGAGAAGAAGCTGAGGGACGAGATCAAGATGAACTTGTATAATATATCC CGCCACGTCAGCAATTCGCTTGTTATGATGAAGAAGGTTCCCGGAGTTGCGGAGGTTGAGAAATCGTCTGGATCGGATGCTGCTCGTCGTTTATGGTCGG AAGACGGGTTTGGTGGTAATGTGGGGAAAGACGGATTCCCGACGTGGCTTTCGAGGAAGGACCGGAGATTGCTTCAGGCGCCGGTGAATGAGACAAAGTT TGACTTGATTGTGGCTAAGGACGGTACCGGGAACTTCAGTACCATCAGTGAGGCGGTGGCTGCGGCTCCCAATTCCAGCCATACCAGGTTTGTGATATAC ATAAAGAGTGGGGCGTACTTCGAGAACGTGGAGGTGGAGAAGAAGAAACTAAGACTGATGTTCATCGGAGATGGGATGGGCAAGACTGTCGTGAAAGCCA ATCGGAGCGTCGTCGATGGATGGACCACTTTCCGTTCCCCAACTGTCGCGGTAGTTGGGAATGGATTCCTAGCCAAGGGGATAACAATCGAGAATTCAGC CGGACCGAGCAAGCACCAAGCCGTAGCCTTACGTTCCGGCGCCGACTTCAGCGCTTTCTACCAGTGCAGCTTCGTAGGTTACCAGGACACTCTGTTCCGT CCACTCCCTCCGTCAGTTCTACCGCGACTGCGACGTCTACGGCACCGTGGACTTCATATTCGGAAACGCCGCGGTCGTCCTCCAAAACTGCAACCTTTAC GCCCGGAAACCAAACCCGAATCAGAAGAACATCTTCACTGCCCAGGGGCGGGAGGACCCGAACCAAAACACCGGCATTGTTCTCCACAACTGTAA
AA sequence Show only first row Show all	>Lus10001466 pacid=23161036 polypeptide=Lus10001466 locus=Lus10001466.g ID=Lus10001466.BGIv1.0 annot-version=v1.0 MYNLTKLLALLPISLFLLATFLFLHRPIFTPSHINPNTKPTKLPQLHFYKHLDSINSACDGTLYPDLCVSTLLSSFPGRLTFSSKSRSIPKLITATLNRT MSEVRASSSNCSRIQRTYIHSHLDRVALADCLELLDDSMSDILISMSDLKHMKSIPRHYNDMRTLLSAAITNQFTCLDGFAYSREKKLRDEIKMNLYNIS RHVSNSLVMMKKVPGVAEVEKSSGSDAARRLWSEDGFGGNVGKDGFPTWLSRKDRRLLQAPVNETKFDLIVAKDGTGNFSTISEAVAAAPNSSHTRFVIY IKSGAYFENVEVEKKKLRLMFIGDGMGKTVVKANRSVVDGWTTFRSPTVAVVGNGFLAKGITIENSAGPSKHQAVALRSGADFSAFYQCSFVGYQDTLFR PLPPSVLPRLRRLRHRGLHIRKRRGRPPKLQPLRPETKPESEEHLHCPGAGGPEPKHRHCSPQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02300			Plant invertase/pectin methyle...		Lus10001466 [exp]	0	1
AT4G02320			Plant invertase/pectin methyle...		Lus10001467 [exp]	1.0	0.9983
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10030097 [exp]	1.4	0.9899
AT5G20860			Plant invertase/pectin methyle...		Lus10017665 [exp]	4.9	0.9844
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10031548 [exp]	5.3	0.9771
AT5G13660			unknown protein		Lus10005963 [exp]	5.7	0.9864
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031283 [exp]	6.0	0.9055
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	6.6	0.9864
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10032806 [exp]	7.3	0.9577
AT5G20260			Exostosin family protein (.1)		Lus10039981 [exp]	7.4	0.9864
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10012552 [exp]	7.5	0.9320

Compare expression of checked genes

Lus10001466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.