Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02280 1384 / 0 ATSUS3, SUS3 sucrose synthase 3 (.1) AT5G49190 1277 / 0 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT3G43190 1137 / 0 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT5G20830 1107 / 0 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT1G73370 959 / 0 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT5G37180 914 / 0 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) AT4G10120 159 / 1e-39 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT5G11110 150 / 5e-37 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) AT5G20280 144 / 5e-35 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) AT1G04920 136 / 2e-32 ATSPS3F sucrose phosphate synthase 3F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010308 [exp] 1355 / 0 AT5G49190 1318 / 0.0 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) Lus10020506 [exp] 1145 / 0 AT3G43190 1420 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10012454 [exp] 1116 / 0 AT3G43190 1374 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10007372 [exp] 926 / 0 AT1G73370 1195 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10020791 [exp] 925 / 0 AT1G73370 1200 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10041979 [exp] 911 / 0 AT1G73370 1190 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10017984 [exp] 839 / 0 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10013417 [exp] 709 / 0 AT4G02280 1162 / 0.0 sucrose synthase 3 (.1) Lus10008205 [exp] 559 / 0 AT4G02280 466 / 2e-159 sucrose synthase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202300 [exp] 1413 / 0 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.006G136700 [exp] 1164 / 0 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.018G063500 [exp] 1150 / 0 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.015G029100 [exp] 976 / 0 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.012G037200 [exp] 975 / 0 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.004G081300 [exp] 957 / 0 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.017G139100 [exp] 949 / 0 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.013G095500 [exp] 155 / 2e-38 AT4G10120 1513 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Potri.018G025100 [exp] 150 / 7e-37 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.006G064300 [exp] 150 / 8e-37 AT5G20280 1625 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF00862 [flax] [poplar] Sucrose_synth Sucrose synthase
Representative CDS sequence Show only first row Show all	>Lus10001468 pacid=23161027 polypeptide=Lus10001468 locus=Lus10001468.g ID=Lus10001468.BGIv1.0 annot-version=v1.0 ATGGATAACCATAAGCTCGGACGAATTTCCAGCACGAGGGAGCGCGTCGAGGACACACTCTCTGCTTATCGTAACCATCTTCTTTCCCTTCTTTCCAGGT ACGTGGATCAAGGAAAAGGAATTCTGCAACCTCACAACTTGATCGATGAGCTGGATAACATCGTCTGCGACGACAAAGAAGCTAGGGAAACGCTTCGTAA TTGCCCCTTCGGTGAAGTCCTTGAATCTGCGCAGGAAGCCATAGTACTGCCGCCATTCATAGCAATTGCAGTTCGTCCAAGGCCTGGTGTTTGGGAGTAT GTCCGCGTTAATGTTAATGAACTCAGCGTGGATCAATTGACTGTCTCTGAGTACCTTAAGTTCAAAGAAGAGCTTGTGGACGGGCAGGCTAATGATCCGT ATGCTCTGGAGCTGGATATGGAGCCTTTCAACGCTAGCTTCCCTCGGCCTAGTCGTTCTTCGTCAATCGGTAATGGAGCACAGTTCCTCAATCGGCATCT CTCCTCAATCATGTTCCGTAGTAAGGACTGCTTGGAACCTCTGCTTGATTTCTTACGGGCACACAAGTACAAAGGCCATGGTTTAATGTTGAATGAAAGG GTACAAAGTGTATCAAGACTTCAATCTGTGCTTGCTAAGGCAGAAGAATACATCTCCAAGCTCCCACCTGATACGCCTTACTCTGAGTTTGAGTTTGACG TACAAGGAATGGGGTTTGAGATAGGGTGGGGTGATACTGCAGAGCGGACGATTGAGACTATGCATCTTCTATTGGACATCTTGCAGGCTCCTGATCCTTC AACTTTAGAAACATTCCTGGGGAGAGTACCTATGGTATTCAACGTCGTTATCTTGTCTCCACATGGATACTTTGGACAGGCAAATGTTATAGGCATGCCT GACACTGGTGGTCAGGTTGTCTATATTTTGGATCAAGTGCGTGCTTTGGAGAGTGAAATGCTTCTTAGAATAAAGAAGCAAGGATTGGATTTCAAGCCTA GGATTCTGATTGTTACCAGGTTGATACCTGATGCAAAGGGTACTACATGCAATCAGCATATGGAAAGAATCAGTGGAACGGAGTACACTCATATTCTGAG AGTACCCTTTCGATCAGAGAATGGAATTCTTCGAAAGTGGATCTCCAGATTCGATGTCTGGCCATACTTGGAGACTTTTGCTGAGGATGTCGCCAGTGAA ATTGTGGCAGAGTTACAGGCAATTCCAGATTTTATCATTGGTAACTATAGTGATGGGAATCTTGTAGCTTCTTTGTTGGCTTACAAATTGGGTGTTACAC AGTGCACCATCGCCCATGCCCTGGAGAAAACCAAATATCCCGATTCAGATCTCTACTGGAAGAAATTTGATGAAAAGTACCACTTCTCCTGTCAATTCAC TGCTGATCTCTTAGCCATGAATAATGCTGACTTCATCATTACTAGCACTTACCAAGAGATTGCAGGAACGAAACATACTGTGGGACAGTATGAAAGCCAC ACAGCCTTCACCCTTCCAGGACAGTATAGAGTTGTTCACGGTATCGATGTTTTCGATCCAAAGTTCAACATTGTTTCACCTGGAGCTGACATGTCAATCT ACTTCCCTTACTTCGAGAAGCAAAAAAGACTTACAGCTCTGCATGCACCAATAGAGAAGATGTTGTTCGATCCGGACCAAACTGATGACTGGATTGGCAC AATAGATGATCGATCGAAGCCCATCCTTTTTTCAATGGCAAGGCTAGACCGTGTGAAAAATATGACCGGACTAGTCGAGTCCTATGGAAAGAATACCAAA CTAAGGGAGGTGGCAAACCTTGTCGTGGTTGCTGGCTACATTGATGTCAAGAAGTCGAAAGACAGAGAAGAGATGGAAGAAATCGAAAAGATGCATAATC TTATGAAGACCTATGACTTGAGTGGACAATTCCGTTGGATAACAGCTCAAACAAATAGAGCTAGGAATGGTGAGATCTACCGCTACATAGCAGACACAAG AGGAGCTTTCGTTCAGCCTGCTTTTTACGAGGCATTTGGGCTTACAGTTGTGGAGGCAATGACTTGTGGCCTCCCAACTTTCGCCACTCTCCATGGTGGC CCTGCAGAGATTATCGAGCATGGCGTCTCTGGCTTCCATATCGATCCGTATCACCCTGGTCAAAACGCTGCACAAATGGCAGATTTCTTCCAGCAATGCA AGGAAGATCCTAGCTACTGGAACAAAATCTCCGAAGGAGGACTCAAACGCATTTACGAGAGGTACACCTGGAAGATCTATTCTGAACGCCTGATGACCTT GGCTGGAGTATACAGTTTCTGGAAACATGTATCTAAACTTGAACGACAGGAGCCTCGAAGATACCTCGAGATGTTTTATATTCTCAAATTCCGTGATTTG TCAAAGCTGGAATGGCGTGTTGAAGTGGAGAGCGACTCTCTGCTTCCAGTTCAACTACTTCAGTCGGACTACGTGGCAGGCCATCCACTTGAGGTTTATG TCCGAGATATCCTGAGACTGCAACAAGGTGATTGGCAGTGTCGAATTAAACATGTTAAGCGGGAGGCTAATTTTGTGGCGGATGCGTTGGCTAAGATGGG CCATGAGTTCAAGAACGGCAAGAAGTGGTTCCCTTTTCCACCTCCGGGAGTTGTCGATGCTGTGGACGCGGACAAAACTGGGAAACGATACCGTCGTGGA GCTTGTGGACCGGCTGAAACTTTGCCTGCGGAGGAGCCGGATTGA
AA sequence Show only first row Show all	>Lus10001468 pacid=23161027 polypeptide=Lus10001468 locus=Lus10001468.g ID=Lus10001468.BGIv1.0 annot-version=v1.0 MDNHKLGRISSTRERVEDTLSAYRNHLLSLLSRYVDQGKGILQPHNLIDELDNIVCDDKEARETLRNCPFGEVLESAQEAIVLPPFIAIAVRPRPGVWEY VRVNVNELSVDQLTVSEYLKFKEELVDGQANDPYALELDMEPFNASFPRPSRSSSIGNGAQFLNRHLSSIMFRSKDCLEPLLDFLRAHKYKGHGLMLNER VQSVSRLQSVLAKAEEYISKLPPDTPYSEFEFDVQGMGFEIGWGDTAERTIETMHLLLDILQAPDPSTLETFLGRVPMVFNVVILSPHGYFGQANVIGMP DTGGQVVYILDQVRALESEMLLRIKKQGLDFKPRILIVTRLIPDAKGTTCNQHMERISGTEYTHILRVPFRSENGILRKWISRFDVWPYLETFAEDVASE IVAELQAIPDFIIGNYSDGNLVASLLAYKLGVTQCTIAHALEKTKYPDSDLYWKKFDEKYHFSCQFTADLLAMNNADFIITSTYQEIAGTKHTVGQYESH TAFTLPGQYRVVHGIDVFDPKFNIVSPGADMSIYFPYFEKQKRLTALHAPIEKMLFDPDQTDDWIGTIDDRSKPILFSMARLDRVKNMTGLVESYGKNTK LREVANLVVVAGYIDVKKSKDREEMEEIEKMHNLMKTYDLSGQFRWITAQTNRARNGEIYRYIADTRGAFVQPAFYEAFGLTVVEAMTCGLPTFATLHGG PAEIIEHGVSGFHIDPYHPGQNAAQMADFFQQCKEDPSYWNKISEGGLKRIYERYTWKIYSERLMTLAGVYSFWKHVSKLERQEPRRYLEMFYILKFRDL SKLEWRVEVESDSLLPVQLLQSDYVAGHPLEVYVRDILRLQQGDWQCRIKHVKREANFVADALAKMGHEFKNGKKWFPFPPPGVVDAVDADKTGKRYRRG ACGPAETLPAEEPD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10001468 [exp]	0	1
AT3G56250			unknown protein		Lus10030552 [exp]	18.0	0.6969
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036822 [exp]	61.7	0.6476
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10022426 [exp]	110.0	0.6353
AT2G15220			Plant basic secretory protein ...		Lus10019803 [exp]	114.6	0.6580
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10008544 [exp]	126.8	0.6649
AT1G09380			nodulin MtN21 /EamA-like trans...		Lus10001523 [exp]	142.5	0.6448
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	153.5	0.6237
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014586 [exp]	168.6	0.6216

Compare expression of checked genes

Lus10001468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.