Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10010 234 / 4e-75 Protein kinase superfamily protein (.1) AT1G71530 234 / 6e-75 Protein kinase superfamily protein (.1.2) AT5G50860 229 / 6e-72 Protein kinase superfamily protein (.1) AT1G54610 223 / 1e-69 Protein kinase superfamily protein (.1.2.3) AT1G53050 218 / 5e-67 Protein kinase superfamily protein (.1) AT5G44290 209 / 5e-64 Protein kinase superfamily protein (.1.2.3.4) AT1G03740 211 / 6e-64 Protein kinase superfamily protein (.1.2) AT4G22940 204 / 2e-63 Protein kinase superfamily protein (.1) AT1G09600 208 / 6e-63 Protein kinase superfamily protein (.1) AT1G33770 203 / 8e-62 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001285 [exp] 291 / 8e-95 AT1G71530 648 / 0.0 Protein kinase superfamily protein (.1.2) Lus10009464 [exp] 291 / 4e-93 AT1G71530 652 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012805 [exp] 219 / 3e-68 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 219 / 4e-68 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 218 / 1e-67 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035892 [exp] 217 / 5e-67 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10004144 [exp] 219 / 7e-67 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10039836 [exp] 217 / 9e-67 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1) Lus10025773 [exp] 218 / 1e-66 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G073100 [exp] 233 / 9e-73 AT1G71530 740 / 0.0 Protein kinase superfamily protein (.1.2) Potri.013G100100 [exp] 230 / 9e-72 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G226900 [exp] 228 / 2e-70 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.005G045500 [exp] 222 / 4e-69 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G399700 [exp] 224 / 5e-69 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 222 / 5e-69 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 224 / 6e-69 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 220 / 8e-69 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 217 / 3e-67 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.013G032200 [exp] 216 / 4e-67 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001470 pacid=23161032 polypeptide=Lus10001470 locus=Lus10001470.g ID=Lus10001470.BGIv1.0 annot-version=v1.0 ATGCAACAACTGCTTAGAGGCCTGCAGCACTGCCACGAGTGCGAGATCCTGCATCGAGACATTAAGGGATCGAATCTACTGATCAATAACGACGGAGTTT TGAAGATCGGGGAATTTGGATTGGCTAACTTCTACCGTGGTTCGCAGGAGCATCAGACCTTGACGGGTAGGGTTGTGGCTCTTTGGTATAGAGCACCTGA GCTCTTGCTTGGTGCTAGTCAATATGGAGTTGGGATTGACCTTTGGAGTGTTGGCTGCATACTTGCTGAACTCTTTGCTGGGAGGCATGTCATACCTGGA CAAACTGAGAAGAATACCGGCACAGAAAAGGTACACGAGTTCAAGCATTGCGTCGAAGAAGCATTCAAGAACTTCCCACCTTCAGCTTTGGCTCTTGTGG ATCAGCTGCTGTCGACTGAGCCTGAAGCTAGAGGAACAGCTGCTTCTGCTCTCGAAAGCCAGTTCTTCAACAGTGAGCCATTCCCTTGTGAACCTTCAGC CTTACCAAAGTATCCTCCAAGCAAGGAACATTTGACCCCCAATACTTTTGGATTGCCAACACAACACTCTACTATTAGAGCAATTTCACTTGAATTTGTT AACCCTTCCATGTGTTTCAATATGAACGACGATGGGTCCCGAACATATTTTAGTGCGGCCACGTATGAAAAAAATGAGAGGGAAATTATTTAA
AA sequence Show only first row Show all	>Lus10001470 pacid=23161032 polypeptide=Lus10001470 locus=Lus10001470.g ID=Lus10001470.BGIv1.0 annot-version=v1.0 MQQLLRGLQHCHECEILHRDIKGSNLLINNDGVLKIGEFGLANFYRGSQEHQTLTGRVVALWYRAPELLLGASQYGVGIDLWSVGCILAELFAGRHVIPG QTEKNTGTEKVHEFKHCVEEAFKNFPPSALALVDQLLSTEPEARGTAASALESQFFNSEPFPCEPSALPKYPPSKEHLTPNTFGLPTQHSTIRAISLEFV NPSMCFNMNDDGSRTYFSAATYEKNEREII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71530			Protein kinase superfamily pro...		Lus10001470 [exp]	0	1
AT5G52170	HD	HDG7	homeodomain GLABROUS 7 (.1)		Lus10035095 [exp]	1.0	0.9977
					Lus10042024 [exp]	2.4	0.9700
					Lus10033901 [exp]	3.0	0.9743
					Lus10014195 [exp]	3.5	0.9774
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10009583 [exp]	4.9	0.9726
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10008441 [exp]	5.0	0.9716
					Lus10019218 [exp]	5.5	0.9406
AT1G65590		HEXO3, ATHEX1	beta-hexosaminidase 3 (.1)		Lus10022251 [exp]	5.7	0.9641
AT4G31920	GARP	ARR10	response regulator 10 (.1)		Lus10025044 [exp]	7.9	0.9666
AT5G58980			Neutral/alkaline non-lysosomal...		Lus10021829 [exp]	9.4	0.9569

Compare expression of checked genes

Lus10001470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.