Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15890 1292 / 0 binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024785 [exp] 160 / 4e-41 AT4G15900 456 / 4e-157 pleiotropic regulatory locus 1 (.1) Lus10024786 [exp] 108 / 6e-27 ND 62 / 1e-11
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G013300 [exp] 1551 / 0 AT4G15890 1378 / 0.0 binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001471 pacid=23157141 polypeptide=Lus10001471 locus=Lus10001471.g ID=Lus10001471.BGIv1.0 annot-version=v1.0 ATGGAAGGAGAAGATTTCTTTTCGCGATTAATCGCAGACCTAGAGGAAGCTCGAGACAACAACAGCAACCAAACTCCCGTACCTCCACTCTCCCGTTCAG CCCTTCACGATCTCAATTCTATCCTCAACGCCAATGACTCCGACCTCCTCGATCAATTCTTCTCCCGCCTTTCCTCGAAATCGCTATCTCCGGCTTCTCT CCTCCCGCCCCTCACCTCCGCCATGGATTCCGGCCCCGTTTATCTCTCCCTCTTGTCATCCGAAGCTTATCTCTCTCTCCTCCTTTGCCCTAATTCTCCT GTGTTTACTCTCTTCAATCCCATGTCATTTCACGCATTGCTTCGCTCCATCCGCCGCGCCCTTAAGTCTCCGCCGCCTCCCGTGCAAGGGGATAACACGC CTTCTTCAACTGGCCATGCTGCTGGATCTCGGGTTCCCAAAAAGAGAAAGGGCGGTCGTGGAGGAAGGAATAATAGGTGTAAGAATGTTTATAATGATGG TGAAGATGCTAATGATGGAGAGAGTGAGGTGACAATTGTCAAGCTATTTTGCAGTGTTGTCGAAAAATTAGCATCTGTTTTGGATTTAATTCATTTGAGT AGGTTTCCTGATAGTTTGAAGTCGCTGGTTCAGACTGTGGTGGATATTCCTGTTTTAGCTTCCGAAATGCTTGGTGGCTCTTTGACTTACTCTAACGGAT TGTCGGGTTTGTGCTCGAGTATTTTGAGTCGACTGTTGAAACCCGAGCACGGAGAGGAAGGAGAGACTACTGCTGAATTGTTCAAGTCTTTAACGCCTTT GATCTTAGGTGCCAAGTCCCAAGCCAGGAACTTCGCGTTAGGTTTTGTGAAGAATTTGCTAACGGGTTTGGCTAGAAACTGCCATGGTGCGAACAAGGCT TGCCAGAATTTGCCACGTTATCTGATACTGAAAGCGCCGGAGAAGGCTGAGCCTCGTGGGTTGGCGGTGGAGGCCATAATGGATATTGTGAAGGTTATGG AGTTGAGTGATCAAACTGTGTTCGTGGACTATGTTTTGAAGATGACCAATGGGAAGGCTAATCTGAGGCTTCTTGCTGTAGACCTGATATTGAATTTGTT ACTGCTGTTAAAAGATCCGTTTGGATTGAATTTGGATGGTGAGCTGAAGGACAGCTGGGGATTTAAGTGTCTGGAGGCATTGATCCAGCGGAGTTGTGAT TCCAGCGCTTTTACTAGAGCTCGTGCATTGTCAAATTTGGCACAAATAGTAGGATCCCTATCTTCTGATGAGAGGAATCATGCCATTCTCAGAGGAGCCA TGGGGTTGGGAGAAGTCAATGGGGACAAGGATGAGACTAGGATAGATGACATCTTGAGAAGACGGTGTATGGACGAGAAAGCTAATGTTCGGAGATCTGC ACTTCTTTTGGTTAACAGGTTGACTGCTATTGTACCGGGTAATCTGGACGGAGTTGTGCTCAAGACTATGGGAATGGCTTGTTCAGACCCACTTGTCAGC ATACGCAAAGCAGCATTATCAGCACTGTCACAGACCTTCAGGACATCTTCAGATGAAAGTGCAATTATTGAGTGGCTTCATTCTGTACCTCGTTTGATAG CAGATAATGAAACTAGCATTCAAGAAGAGTGTGAGAGCTTGTTCCTAGAACTAGTCCTCGATCGTGTTTCAAAGGCAGGAAATGATCACGGGATACAAAG TAGTTCCAGTTTGTCAGATTCGGAGGTACATAAATTGAGTGTAGAAAAAGAGATGGAGTTGTTGTTTCCAGGAGTTCTGGTTATTTTGAAAACGATCTGC AATGGAGAGGTCACACCCTGGGTGAAGAAAATCTGCAATAGTCTTGGGAAGAAGAAACGACTCAAGCCTGTGATTGCTACTTCACTACAGAATATCATAA ACACTTCAGAATCTAATTGGCTGAGACATTCCATGCCTGTCGATAAATGGACTGCACCGCCTGGTGCTTGGCTTCTTTTATCGGAAGTTTCAGCACACGT TTCCAAAGCAGTTGACTGGAAGTTTCTCCATCATCATTGGCAGCTCCTTGACAAGTTTGGGGAGGCCAATGAGTTTAATGCTGAGGAAGATGCTCCTGAG CACGGATTTAGTATAAATTTGAATTCTGTTGCCTGGGCAGGAGATCGTGTGTTTCTACTGCAAACAATCTCTAACGTATCTGTTGAGCTGCCTCCTGAAG CTGCCGCAGATCTAGCTCATAACTTGCTCAAAAGAATTGAGGACTTCAGCATGCATTCGACTGAGGTGAATGCACATGTTAAAGCCCTTAGAACATTGTG TAAACGGAAGGCTGCAGATCCTGGTGAGGCAGATGCACTAGTCATCAAATGGGTACAGCAGGTTCTCTCAAAAGCTTCGAAAATATTGGAGAAGTACATT GCAGATAACTCTCGAGTAAACAATGAGAATAATTTCTTCACGCCACCTAGGAAAGGAAGTAGGAAGAGCAAGAAAGCAGCATCCACATCCAGGCTACAAT CTGAAGTAGTGACTGCAGCTCATACAATAGGATCCTTGGTTCTTGTTTGCCCATCAGCTGATATGAACAATGTCATTCCTCTACTATACACAATCATAAC TTCTGGAAATTCTGACCCCAAGTTGAGCAAACTCCCTGGTCCTCTTGTCCCTGTGAAAGAGACAGCTCCCTCTTTGTACATTCAGGCGTGGTTGACAATG GGGAAGATTTGCTTAGCAGATGGGAAACTTGCAAAGAACTACATCCCTTTGTTTGTGCAGGAGCTTGAGAAAACTGATCTTGCTCCTCTTCGCAACAATC TTGTAGTCACAATGGCAGACTTCTGTGTTCGCTATACCGCACTGGTAGATTGTTACATACCAAAGATCACAAAGTGCCTTCGTGATCCTTGTGAACTAGT GAGGCGGCAAACATTTATTTTACTCTCAAGGCTTCTTCAGAGGGACTATGTTAAGTGGAGAGGAGTGTTGTTCCTGAGATTCCTCTTGGCTCTTGTTGAT GAGTCTGAAAAGATAAGGCAACTGGCTGACTTCCTGTTTGGCAATATTTTGAAAGTGAAGGCGCCACTTTTAGCTTACAATAGTTTCGTGGAAGCCGTTT ACGTTCTGAACGATTGCGATGCACATACTGGTTCCAAAAACACAAGCACAGGGAACCGCCAGTTCTCCATCAGGGGGAACGACGGAAGTTCAAGATCCAA AAGGATGCACATTTATGTTTCTCTGCTGAAACAAATGGCTCCTGAACATCTCTTGGCAACATTTGCTAAGCTCTGCTCTGAGATTCTCGCAGCTGCTTCT GATGGCATGCTCAAACTCGAAGATGCGACAGGCCAGTCTGTTCTTCAGGACGCTTTTGAGATTCTTGGCTGCAAAGAGATCAGAATCCAAACCGCTAGGG GAGCAGCCGCTGATGCTGTAGAAGCCGAGGAAGAAGGTGGTGGTGGAGGTGATGGTGGACTTTCAGCCAAAGGAAGAGCTATAACACAAGCAATTAGGAA GAGCTTGATCCAGAACACCATCCCTATCTTCATAGAACTCAAGCGGCTTCTGGAGAGCAAGAACAGCCCGCTCATAGGCGCCCTCATGGATTGCCTGCGG GTTCTTCTCAAGGATTACAAGAGCGAGATCGACGAGATATTGATCGCCGATAAACAATTACAGAGGGAGCTGGTATATGATATGCAGAAGTACGAAGCAG CCAAGGCCAAGTCCACGGCCGCCGCTGCAACAGTGCAGAATCCGAGCAGTGGCAGCTTTCTTTCGCCTACGAACAAGAAGGATTCAAGGGTGGCTTCGGC AATGGCGGATGCAGCTGCGGAGGTGGCTGCACGGTCTGTTTTAAGAGAAGTGAACAGAGGCACTGGGACGCCGCCGTTGAGCGCCATCAATGTGCCCAAG CTCAGAACCGGCGCCACGCTGGGGAAGAGCTGCGATGGTGATGGTGAGCTTCGAACTGATCGGCCAGCCGAGGTGTTGGAATCTGTTAGGAGGCGTCAGA CTTTCATGTCTGATGATGAGAACTGA
AA sequence Show only first row Show all	>Lus10001471 pacid=23157141 polypeptide=Lus10001471 locus=Lus10001471.g ID=Lus10001471.BGIv1.0 annot-version=v1.0 MEGEDFFSRLIADLEEARDNNSNQTPVPPLSRSALHDLNSILNANDSDLLDQFFSRLSSKSLSPASLLPPLTSAMDSGPVYLSLLSSEAYLSLLLCPNSP VFTLFNPMSFHALLRSIRRALKSPPPPVQGDNTPSSTGHAAGSRVPKKRKGGRGGRNNRCKNVYNDGEDANDGESEVTIVKLFCSVVEKLASVLDLIHLS RFPDSLKSLVQTVVDIPVLASEMLGGSLTYSNGLSGLCSSILSRLLKPEHGEEGETTAELFKSLTPLILGAKSQARNFALGFVKNLLTGLARNCHGANKA CQNLPRYLILKAPEKAEPRGLAVEAIMDIVKVMELSDQTVFVDYVLKMTNGKANLRLLAVDLILNLLLLLKDPFGLNLDGELKDSWGFKCLEALIQRSCD SSAFTRARALSNLAQIVGSLSSDERNHAILRGAMGLGEVNGDKDETRIDDILRRRCMDEKANVRRSALLLVNRLTAIVPGNLDGVVLKTMGMACSDPLVS IRKAALSALSQTFRTSSDESAIIEWLHSVPRLIADNETSIQEECESLFLELVLDRVSKAGNDHGIQSSSSLSDSEVHKLSVEKEMELLFPGVLVILKTIC NGEVTPWVKKICNSLGKKKRLKPVIATSLQNIINTSESNWLRHSMPVDKWTAPPGAWLLLSEVSAHVSKAVDWKFLHHHWQLLDKFGEANEFNAEEDAPE HGFSINLNSVAWAGDRVFLLQTISNVSVELPPEAAADLAHNLLKRIEDFSMHSTEVNAHVKALRTLCKRKAADPGEADALVIKWVQQVLSKASKILEKYI ADNSRVNNENNFFTPPRKGSRKSKKAASTSRLQSEVVTAAHTIGSLVLVCPSADMNNVIPLLYTIITSGNSDPKLSKLPGPLVPVKETAPSLYIQAWLTM GKICLADGKLAKNYIPLFVQELEKTDLAPLRNNLVVTMADFCVRYTALVDCYIPKITKCLRDPCELVRRQTFILLSRLLQRDYVKWRGVLFLRFLLALVD ESEKIRQLADFLFGNILKVKAPLLAYNSFVEAVYVLNDCDAHTGSKNTSTGNRQFSIRGNDGSSRSKRMHIYVSLLKQMAPEHLLATFAKLCSEILAAAS DGMLKLEDATGQSVLQDAFEILGCKEIRIQTARGAAADAVEAEEEGGGGGDGGLSAKGRAITQAIRKSLIQNTIPIFIELKRLLESKNSPLIGALMDCLR VLLKDYKSEIDEILIADKQLQRELVYDMQKYEAAKAKSTAAAATVQNPSSGSFLSPTNKKDSRVASAMADAAAEVAARSVLREVNRGTGTPPLSAINVPK LRTGATLGKSCDGDGELRTDRPAEVLESVRRRQTFMSDDEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15890			binding (.1)		Lus10001471 [exp]	0	1
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10002857 [exp]	2.6	0.9643
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10006070 [exp]	2.8	0.9600
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10004038 [exp]	4.7	0.9627
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Lus10010010 [exp]	5.2	0.9627
AT5G52910		ATIM	timeless family protein (.1)		Lus10014946 [exp]	8.1	0.9575
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039167 [exp]	8.4	0.9579
AT5G55820		WYR	WYRD, unknown protein		Lus10022519 [exp]	10.5	0.9525
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10012799 [exp]	12.1	0.9570
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009052 [exp]	12.2	0.9479
AT4G02110			transcription coactivators (.1...		Lus10010017 [exp]	14.8	0.9426

Compare expression of checked genes

Lus10001471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.