Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011700 [exp] 100 / 8e-28 ND / Lus10002600 [exp] 104 / 4e-27 AT3G14770 62 / 1e-10 Nodulin MtN3 family protein (.1) Lus10010379 [exp] 92 / 2e-23 ND / Lus10039994 [exp] 85 / 5e-22 ND / Lus10012943 [exp] 80 / 7e-19 ND / Lus10004094 [exp] 64 / 4e-14 ND / Lus10037807 [exp] 64 / 4e-13 ND / Lus10019054 [exp] 57 / 1e-10 AT5G56670 48 / 1e-07 Ribosomal protein S30 family protein (.1) Lus10023772 [exp] 49 / 8e-08 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001472 pacid=23157139 polypeptide=Lus10001472 locus=Lus10001472.g ID=Lus10001472.BGIv1.0 annot-version=v1.0 ATGTTGCGTCCACCTGGTGAGGATGCACTGGATTTTCGAGGAGTTGCATCCGTTAGGTATACCATTGAAATGCACTACAACGGTGTCGTAGATACGCACC ACTACATGTACGGAGCAGTCGCTTGTGTTGACGGTGTGGACCCCGACTTTTTCTCGATCACAGAAATAAACAAGATGATTGAGTTGCTGGATTTCAGGTG TAAGTTTTTCCAGATCTTGTACTCTGCACCAGTCATGGGAATAGAAGAGGGGTTAGTACCTCTAGAAGGAGAAGCTGACATCATCGTCTTCAATTTCGCC TTGAATAATGATTTATTGATGAAGGTTTACCTGAGGGAGTTAACTGAGGAACAAGCGAACTTAACGATGGCGAATATAGAACGGGGGAATCCCACAACAT CTGAGACAACGTCTGGTCCTAAAAGAGATTGA
AA sequence Show only first row Show all	>Lus10001472 pacid=23157139 polypeptide=Lus10001472 locus=Lus10001472.g ID=Lus10001472.BGIv1.0 annot-version=v1.0 MLRPPGEDALDFRGVASVRYTIEMHYNGVVDTHHYMYGAVACVDGVDPDFFSITEINKMIELLDFRCKFFQILYSAPVMGIEEGLVPLEGEADIIVFNFA LNNDLLMKVYLRELTEEQANLTMANIERGNPTTSETTSGPKRD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001472 [exp]	0	1
					Lus10040143 [exp]	1.0	0.9256
					Lus10012495 [exp]	5.3	0.8218
AT1G76140			Prolyl oligopeptidase family p...		Lus10021834 [exp]	5.8	0.7316
					Lus10004634 [exp]	21.8	0.8060
AT2G45650	MADS	AGL6	AGAMOUS-like 6 (.1)		Lus10015017 [exp]	22.5	0.7982
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10019783 [exp]	25.2	0.8046
					Lus10022366 [exp]	27.1	0.6840
AT5G10520		RBK1	ROP binding protein kinases 1 ...		Lus10002659 [exp]	27.2	0.7880
AT3G05950			RmlC-like cupins superfamily p...		Lus10038456 [exp]	30.8	0.7957
AT5G01140			Protein of unknown function (D...		Lus10040317 [exp]	31.2	0.6601

Compare expression of checked genes

Lus10001472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.