Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15900 213 / 2e-65 PRL1 pleiotropic regulatory locus 1 (.1) AT3G16650 196 / 1e-58 Transducin/WD40 repeat-like superfamily protein (.1) AT3G16830 43 / 0.0003 TPR2 TOPLESS-related 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006511 [exp] 285 / 8e-93 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10037500 [exp] 279 / 1e-90 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10024785 [exp] 201 / 2e-60 AT4G15900 456 / 4e-157 pleiotropic regulatory locus 1 (.1) Lus10001924 [exp] 42 / 0.0008 AT1G15750 1006 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10039636 [exp] 41 / 0.001 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G012800 [exp] 256 / 1e-81 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.005G148500 [exp] 42 / 0.0004 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10001473 pacid=23157136 polypeptide=Lus10001473 locus=Lus10001473.g ID=Lus10001473.BGIv1.0 annot-version=v1.0 ATGCCGGAATCAGCCTTAAATATGGAACCAGTTGAGCCGCAGTCTCTGAAGAAGCTCAGCCTAAAATCCCTGAAACGATCACTCGATATCTTCTCACCGG CTCAATGCCACGCGGCTCCTTCTGATCCTGATAGTAAACAATTTCACACTAGCCACAAGATGGATCTTGAGTATAAAGGGATTAAAAGCACTGTTGATAT CCCGGGAAAAGGCAATGCTCGAGTCCAGGAGACTGTTGCTCCTTCCAATCCCCTTCCCCTTCCCGATCCACAAAAGGGTGTGGCTCAAAATTCCCTTGTT GTTGGTCCATCTTTGAAGCCTAGGGGAAAGAATGAGGGTGACCTTCCAATCAGAAACACGGCCGTGATTCGTGCACCCGGTACTCAAAGGAACTTTTCAA CTTCTGCAATAATGGAGATTATCCCGAGCAGATGGCCACGTCCAGTCTGGCATCGTCCATGGAAGAATTACAGGGTTATTAGTGGCCACTTGGGGTGGGT GAGATCCATTGCATTCGATCCCAGTTTTGCTGTAAGCCAAAGACATACCTACATTTTCTCTGCTGGTGATGACAAACTGGTTAAATGCTGGGACCTGGCA CACAATAAGGCTATTAGGTCTTATCATGGTCATCTTAGTGGTGTCTACTGGGAGATGCACTCAAGCATGTCTCAACAAAAGACCATTATCAATTCAATGG CTATCAATGAAGATGGAGTAATGGTGACAGGAGGGGATAACGGGAGCTTGTGGTTCTGGTATTGGAAGTGCGGTCATAATTTCCAGAAATCTCAAACAAT AGTACAGCCAGGGTCCTTGGAAAGCGAAGCTGGCATTTTGGCTTCATCGTTTGACAGAACGGGTTCAAGGTTCGTAACATGTGAAGCCGACAAGTCGATC AAGATGTGGAAGGAAGATGAAAACGCCACCCCAGAAACTGACCCTCTCAACTTCAAGCCACCCAAGGATATTACACGGTTCTAG
AA sequence Show only first row Show all	>Lus10001473 pacid=23157136 polypeptide=Lus10001473 locus=Lus10001473.g ID=Lus10001473.BGIv1.0 annot-version=v1.0 MPESALNMEPVEPQSLKKLSLKSLKRSLDIFSPAQCHAAPSDPDSKQFHTSHKMDLEYKGIKSTVDIPGKGNARVQETVAPSNPLPLPDPQKGVAQNSLV VGPSLKPRGKNEGDLPIRNTAVIRAPGTQRNFSTSAIMEIIPSRWPRPVWHRPWKNYRVISGHLGWVRSIAFDPSFAVSQRHTYIFSAGDDKLVKCWDLA HNKAIRSYHGHLSGVYWEMHSSMSQQKTIINSMAINEDGVMVTGGDNGSLWFWYWKCGHNFQKSQTIVQPGSLESEAGILASSFDRTGSRFVTCEADKSI KMWKEDENATPETDPLNFKPPKDITRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16650			Transducin/WD40 repeat-like su...		Lus10001473 [exp]	0	1
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	3.0	0.8170
AT4G25120		ATSRS2	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10036008 [exp]	3.0	0.7177
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	4.2	0.8096
AT5G17680			disease resistance protein (TI...		Lus10012852 [exp]	4.6	0.7299
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039415 [exp]	5.7	0.7978
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	6.2	0.8017
AT3G05725			Protein of unknown function (D...		Lus10031405 [exp]	6.5	0.7360
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10041760 [exp]	6.6	0.7143
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10035919 [exp]	7.3	0.6117
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	8.7	0.7801

Compare expression of checked genes

Lus10001473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.