Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49100 94 / 3e-21 unknown protein AT3G06868 81 / 8e-17 unknown protein AT3G06870 60 / 3e-10 proline-rich family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024784 [exp] 372 / 1e-127 AT3G06868 190 / 1e-56 unknown protein Lus10006504 [exp] 92 / 4e-20 AT5G49100 221 / 5e-68 unknown protein Lus10037496 [exp] 87 / 1e-18 AT5G49100 216 / 6e-66 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G012000 [exp] 161 / 1e-45 AT5G49100 140 / 1e-37 unknown protein Potri.008G220700 [exp] 94 / 3e-21 AT3G06868 155 / 1e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001474 pacid=23157137 polypeptide=Lus10001474 locus=Lus10001474.g ID=Lus10001474.BGIv1.0 annot-version=v1.0 ATGGAGTTAGGTCCTCCGGAGACGGAGGGCGGAGGAAAAAAAGATGATGAGATGGAAGATGGAATGCAATGCAGGTACCATCCATTCAGAAACAGAAACA ACCCAGGTGGGATCTGTGCCTTTTGCCTCCAGGAAAAGTTAGGCAAGCTTCTTGTTTCCTCCTCTTTCCCTGTTGCTGTTGGTCCCTCTACTTCTTCCTC CTCTTCTTCCCCCCCTACTACCACTTCCTTCACATCTCAAAACCTCTCCCTTCCCTCATCAGCTGCTGCTGCTGCAACTTCCACACAAACACACAGACCA AATGACAATCCTAATCGTAATCATAGTTATAGCGACTACTGCAGCTCCCTTCGCAAGCCCAGAATCCCATTTCTCCTGGCCAAGAAGAAGAAGAAGAAAA AGAGCGACGTCGTTTTCAAGCGGAGCAAGTCCACAGCAGCTCCTCCTGCACCAGCCCATTTCTTCGACAAGGATCAATTCACCCCCAGGAAGCATGGTGG TGGCTTCTGGTCATTTATGTACCACTCTACTTCTTCCAATTCAAACAAGAAAAAAATTGATGGAGAAGAAATGGTTGTTGTTGTGGAAGAAGAAGAAGAA GAAGAAGACGACGACAGTAGCAGCAGCAGGCTGGGTAATAGCCAAGCAACCGCCTCTGCATCATCATTTGAGAGGAGGGTTTCGAGATCTAGATCTGTGG GATGTGGGAGCAGGAGCTTTTCAGGGGATTTCTTCGAGAGAATATCTAGTGTTGGATTTGGGGATTGCAAACTGAGGAGAGTTGAGTCCCAGAGAGAAAA GCCTACTACTTCTGCGGAAAGGGTTAAAAAGTGCGGTGGACTCTTTGGTGGTTTCATCATCTCTTCATCTTCTTCTTCATCCTCATCATCCTCTTACTGG GTTTCCGATGTCACTGGGAAATCAACGGCCAATAATATTAATAATGGAAGGACAAATAATAAGAGCTGGAGTTGGGGTTTTGCCAGCCCTATCAGAGCTT TCAGTTTCAGCAGCAAGACTTGTGGTGGTAAGAGGGATCATCATGTCATCAGGGAAACTGGGAATACCAACTCTGCTCCCAACTTGCCTCCCATTCCTTC CTTGTTAACTGTCAGAAGCTGA
AA sequence Show only first row Show all	>Lus10001474 pacid=23157137 polypeptide=Lus10001474 locus=Lus10001474.g ID=Lus10001474.BGIv1.0 annot-version=v1.0 MELGPPETEGGGKKDDEMEDGMQCRYHPFRNRNNPGGICAFCLQEKLGKLLVSSSFPVAVGPSTSSSSSSPPTTTSFTSQNLSLPSSAAAAATSTQTHRP NDNPNRNHSYSDYCSSLRKPRIPFLLAKKKKKKKSDVVFKRSKSTAAPPAPAHFFDKDQFTPRKHGGGFWSFMYHSTSSNSNKKKIDGEEMVVVVEEEEE EEDDDSSSSRLGNSQATASASSFERRVSRSRSVGCGSRSFSGDFFERISSVGFGDCKLRRVESQREKPTTSAERVKKCGGLFGGFIISSSSSSSSSSSYW VSDVTGKSTANNINNGRTNNKSWSWGFASPIRAFSFSSKTCGGKRDHHVIRETGNTNSAPNLPPIPSLLTVRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06868			unknown protein		Lus10001474 [exp]	0	1
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10025355 [exp]	2.0	0.8855
AT4G39790			Protein of unknown function (D...		Lus10024039 [exp]	3.2	0.9042
					Lus10007141 [exp]	8.7	0.8747
AT5G25510			Protein phosphatase 2A regulat...		Lus10013141 [exp]	8.8	0.8649
AT5G65630		GTE7	global transcription factor gr...		Lus10039630 [exp]	9.8	0.8671
AT5G67200			Leucine-rich repeat protein ki...		Lus10041101 [exp]	12.6	0.8790
AT5G14620		DMT7, DRM2	domains rearranged methyltrans...		Lus10014552 [exp]	12.7	0.8407
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10024350 [exp]	13.5	0.8495
AT3G53540			unknown protein		Lus10025296 [exp]	13.6	0.8547
AT2G26520			unknown protein		Lus10032762 [exp]	16.3	0.8397

Compare expression of checked genes

Lus10001474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.