Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15920 224 / 2e-73 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G16690 197 / 4e-63 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT3G48740 141 / 2e-40 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1) AT4G10850 140 / 2e-40 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1) AT2G39060 135 / 2e-38 SWEET9, AtSWEET9 Nodulin MtN3 family protein (.1) AT5G23660 134 / 7e-38 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1) AT5G50790 134 / 8e-38 SWEET10, AtSWEET10 Nodulin MtN3 family protein (.1) AT5G50800 133 / 2e-37 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT5G40260 131 / 2e-37 SWEET8, AtSWEET8 Nodulin MtN3 family protein (.1.2) AT5G13170 133 / 3e-37 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015196 [exp] 171 / 9e-51 AT4G15920 208 / 2e-65 Nodulin MtN3 family protein (.1) Lus10034880 [exp] 154 / 9e-46 AT5G62850 291 / 5e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10002364 [exp] 151 / 1e-44 AT5G62850 268 / 7e-91 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10042131 [exp] 146 / 1e-42 AT5G62850 265 / 2e-89 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10033416 [exp] 144 / 8e-42 AT5G62850 283 / 8e-97 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10018932 [exp] 137 / 4e-39 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Lus10000310 [exp] 137 / 1e-38 AT5G13170 295 / 3e-100 senescence-associated gene 29 (.1) Lus10015754 [exp] 135 / 4e-38 AT5G13170 289 / 7e-98 senescence-associated gene 29 (.1) Lus10003200 [exp] 134 / 5e-38 AT4G10850 255 / 1e-85 Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G220600 [exp] 262 / 2e-88 AT4G15920 261 / 3e-88 Nodulin MtN3 family protein (.1) Potri.013G014500 [exp] 249 / 3e-83 AT4G15920 241 / 2e-80 Nodulin MtN3 family protein (.1) Potri.005G023900 [exp] 208 / 4e-67 AT3G16690 190 / 2e-60 Nodulin MtN3 family protein (.1) Potri.013G014400 [exp] 196 / 4e-62 AT4G15920 209 / 5e-68 Nodulin MtN3 family protein (.1) Potri.013G013900 [exp] 195 / 6e-61 AT4G15920 205 / 4e-65 Nodulin MtN3 family protein (.1) Potri.013G013800 [exp] 192 / 5e-60 AT4G15920 214 / 3e-69 Nodulin MtN3 family protein (.1) Potri.001G344300 [exp] 148 / 1e-43 AT3G28007 239 / 2e-79 Nodulin MtN3 family protein (.1) Potri.005G187300 [exp] 139 / 6e-40 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Potri.002G072600 [exp] 137 / 3e-39 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.002G072700 [exp] 137 / 3e-39 AT1G21460 345 / 5e-121 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10001475 pacid=23157138 polypeptide=Lus10001475 locus=Lus10001475.g ID=Lus10001475.BGIv1.0 annot-version=v1.0 ATGGAAATTTTGACCCTGTGTATTGGAATTATAGGGAATATCATCTCAGTGCTCATGTTCCTTTCTCCTGTGGGGACATTCTGGAGAATAATAAAGAATG GGTCGACGGAGGAATTCGAGAGCCTGCCATACATATGCACGCTGCTGAATGCTTCACTATGGACATATTACGGAAGCATCAAGCCAGGAGCTTACTTGGT AGCCACTGTGAATGGGTTCGGGATCCTAGTTGAGATCGTCTACGTTGCTCTCTTCCTCTGCTATGCTCCAACCAAAATGAAGGGGAAGACGGGAGCAATG GTGGGGGTGTTGAACGTGGGGTTTCTGGGTGCAGCGGTGGTGGCCACATGGGTGGCGCTTGAAGGAGAAGCCAGAATTAATGCGATTGGCTTCCTTAGTT CAGCTTTAAACATTGTCATGTACGGCTCACCTCTTTCTGCCATGAAAACAGTGATAACAACAAAGAGCGTGGAATACATGCCCTTCTTCCTCTCATTTTT CCTCTTCTTGAACGGTGGAATCTGGACCGTCTATGCCGTCCTCACTAAAGATCTTTTTCTTGGGGTCCAGATTGATCCTAGCCTTAGCCGCCCCCACCTT ATCCTCTCGGCAGCAAAAAAAAATCCAGAGAGACCTAACGCTTGGCTCTCCCCCTCTGGTGATTTCGCCTTCGGCTTCCTACCCCTCGCCGGAAACACCA GCACCTCTTTCCTCCTCTGCATCTACTACGCCAGAATCCCCTACCGGACAATCGTCTGGTACGCCAACGGCGACTCCCATGCTCCGGCAGGCTCAACCGC CCAGCTATAA
AA sequence Show only first row Show all	>Lus10001475 pacid=23157138 polypeptide=Lus10001475 locus=Lus10001475.g ID=Lus10001475.BGIv1.0 annot-version=v1.0 MEILTLCIGIIGNIISVLMFLSPVGTFWRIIKNGSTEEFESLPYICTLLNASLWTYYGSIKPGAYLVATVNGFGILVEIVYVALFLCYAPTKMKGKTGAM VGVLNVGFLGAAVVATWVALEGEARINAIGFLSSALNIVMYGSPLSAMKTVITTKSVEYMPFFLSFFLFLNGGIWTVYAVLTKDLFLGVQIDPSLSRPHL ILSAAKKNPERPNAWLSPSGDFAFGFLPLAGNTSTSFLLCIYYARIPYRTIVWYANGDSHAPAGSTAQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Lus10001475 [exp]	0	1
AT5G63380			AMP-dependent synthetase and l...		Lus10036994 [exp]	2.0	0.8742
AT5G02510			unknown protein		Lus10025332 [exp]	2.2	0.8416
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10010398 [exp]	2.4	0.8400
AT2G36970			UDP-Glycosyltransferase superf...		Lus10016127 [exp]	4.0	0.8585
AT3G07700			Protein kinase superfamily pro...		Lus10006363 [exp]	5.7	0.8552
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10001975 [exp]	6.3	0.8327
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10036325 [exp]	6.5	0.7990
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	9.8	0.8491
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10013052 [exp]	10.7	0.8069
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039479 [exp]	14.5	0.8144

Compare expression of checked genes

Lus10001475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.