Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004836 [exp] 275 / 2e-95 ND / Lus10007996 [exp] 270 / 1e-93 ND / Lus10033216 [exp] 269 / 2e-90 AT1G48120 41 / 0.002 hydrolases;protein serine/threonine phosphatases (.1) Lus10000712 [exp] 255 / 6e-88 ND / Lus10000467 [exp] 251 / 2e-86 ND 37 / 0.005 Lus10021615 [exp] 250 / 4e-86 ND 41 / 1e-04 Lus10027682 [exp] 231 / 2e-78 AT1G48120 45 / 4e-06 hydrolases;protein serine/threonine phosphatases (.1) Lus10001883 [exp] 228 / 4e-77 ND / Lus10034956 [exp] 225 / 1e-75 ND 39 / 0.002
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10001476 pacid=23157140 polypeptide=Lus10001476 locus=Lus10001476.g ID=Lus10001476.BGIv1.0 annot-version=v1.0 ATGACGCACGCCCACGTCGATTGGCTTCCGTTCGGTACACCTGACTTCAACGGTGAGGCTTGGTGGTCCATGTATAGTGGGGGCATACATGTACTCGACT ACGTTGAGCCCCATGATCCCAGCCGTGTGTTGCGCCAGTACGGCTACCGGCAGATGATCCCGGATTCGATTCTCACGCCGGAGTTAGCTTCTCAACCGGC GGATGGGACGCAGTACGTAGTCAGACACTCTAGGTTTGACTACAGCCGGTTTGGGAATTTGCTGGCCCTGATGTACTTCAGCACGTGCAGTGTGCCCGGA GCGCCTGATGGTAACGCGTATGCGGAGTACATGGCGTGGCACCTAGACCGTATACACTCACAAATCGTCCCCACGCGCGCAACTGATATGGCACACCCAC CGCTGGCCCCAGAGCAGGATATGCGGTCTTTTTGTGCTTGGTTGGCCCCCTTGTACCAATGTGATGGTAGGGACGACTACGTTGACCGGGCGCGAGAGTA CTATGATTTTGTTGAGGGCATGCACGGGTTGTGCTCTCAATATACTCCGTAG
AA sequence Show only first row Show all	>Lus10001476 pacid=23157140 polypeptide=Lus10001476 locus=Lus10001476.g ID=Lus10001476.BGIv1.0 annot-version=v1.0 MTHAHVDWLPFGTPDFNGEAWWSMYSGGIHVLDYVEPHDPSRVLRQYGYRQMIPDSILTPELASQPADGTQYVVRHSRFDYSRFGNLLALMYFSTCSVPG APDGNAYAEYMAWHLDRIHSQIVPTRATDMAHPPLAPEQDMRSFCAWLAPLYQCDGRDDYVDRAREYYDFVEGMHGLCSQYTP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001476 [exp]	0	1
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10026180 [exp]	1.4	0.9629
AT5G03840		TFL-1, TFL1	TERMINAL FLOWER 1, PEBP (phosp...		Lus10017052 [exp]	7.7	0.7904
AT5G52390			PAR1 protein (.1)		Lus10018204 [exp]	10.3	0.9238
AT4G35220			Cyclase family protein (.1)		Lus10027872 [exp]	14.6	0.8417
AT2G02850		ARPN	plantacyanin (.1)		Lus10041848 [exp]	15.3	0.8377
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	16.9	0.8393
AT3G50150			Plant protein of unknown funct...		Lus10005799 [exp]	18.8	0.8393
					Lus10024141 [exp]	20.6	0.8393
AT4G39670			Glycolipid transfer protein (G...		Lus10035024 [exp]	21.9	0.8246
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	22.3	0.8393

Compare expression of checked genes

Lus10001476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.