Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23750 158 / 1e-48 Remorin family protein (.1.2) AT3G48940 144 / 2e-43 Remorin family protein (.1) AT3G61260 132 / 2e-38 Remorin family protein (.1) AT2G45820 123 / 3e-35 Remorin family protein (.1) AT1G63295 92 / 2e-23 Remorin family protein (.1) AT4G00670 74 / 1e-16 Remorin family protein (.1) AT3G57540 71 / 2e-14 Remorin family protein (.1) AT2G41870 67 / 3e-13 Remorin family protein (.1) AT1G67590 60 / 1e-10 Remorin family protein (.1.2) AT2G02170 53 / 3e-08 Remorin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008477 [exp] 294 / 1e-101 AT5G23750 154 / 5e-47 Remorin family protein (.1.2) Lus10008014 [exp] 191 / 2e-62 AT5G23750 158 / 5e-50 Remorin family protein (.1.2) Lus10027460 [exp] 154 / 5e-47 AT3G61260 192 / 2e-62 Remorin family protein (.1) Lus10039215 [exp] 153 / 9e-47 AT3G61260 196 / 7e-64 Remorin family protein (.1) Lus10014785 [exp] 140 / 5e-42 AT3G61260 177 / 1e-56 Remorin family protein (.1) Lus10018840 [exp] 138 / 7e-41 AT3G61260 206 / 1e-67 Remorin family protein (.1) Lus10024514 [exp] 132 / 5e-39 AT5G23750 113 / 5e-32 Remorin family protein (.1.2) Lus10017811 [exp] 131 / 5e-38 AT3G61260 199 / 5e-65 Remorin family protein (.1) Lus10030379 [exp] 121 / 2e-34 AT3G61260 178 / 4e-57 Remorin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124400 [exp] 157 / 1e-48 AT5G23750 129 / 6e-38 Remorin family protein (.1.2) Potri.015G143600 [exp] 149 / 5e-45 AT5G23750 111 / 1e-30 Remorin family protein (.1.2) Potri.014G081300 [exp] 142 / 2e-42 AT3G61260 199 / 4e-65 Remorin family protein (.1) Potri.002G157700 [exp] 142 / 2e-42 AT3G61260 167 / 2e-52 Remorin family protein (.1) Potri.001G107000 [exp] 134 / 2e-39 AT5G23750 55 / 2e-09 Remorin family protein (.1.2) Potri.012G140800 [exp] 134 / 4e-39 AT5G23750 98 / 2e-25 Remorin family protein (.1.2) Potri.016G054400 [exp] 71 / 2e-14 AT2G41870 206 / 7e-66 Remorin family protein (.1) Potri.006G053200 [exp] 70 / 3e-14 AT3G57540 196 / 2e-61 Remorin family protein (.1) Potri.012G140900 [exp] 65 / 2e-13 AT3G48940 78 / 6e-19 Remorin family protein (.1) Potri.008G178300 [exp] 64 / 5e-12 AT1G67590 306 / 1e-102 Remorin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10001477 pacid=23157130 polypeptide=Lus10001477 locus=Lus10001477.g ID=Lus10001477.BGIv1.0 annot-version=v1.0 ATGGGAGAAGAAGAGCCGAAAGTTATTAGTGCAGCAGCTGATAAGGCATCACTGGAGGATTCCCCTGTTTCCCCTGCTGCTGCTGCTGCTGTTGCAGAGA ATCAGATGGTTTCTGTTGTTGATGAAAAGAGACAAGTTGATGATCATCGGGAAGAAGGTGATCATGATCAGAAAGATGGTTCTTCTCCAAGCAAGAAGAG TGCCTCCTCCCCTGTATCTGAAACTGAAAATGAAGCAGCAGTTGCAGAAAAGACAACAGAGAAAACTCCACTCAACCCAGTTCGCAGAGATGCTGCACTT GCAAGAGTTCAAACCGACAAAAGGAATGCTTTGATCTCTGCATGGGAAGAAAACGAGAAGGCCAAAATCGACAACAAGACTTACAAAAGGCTGTCCGCAA TCGAGTCGTGGGAGAACACCAAGAAAGCAGTCGTGGAAGTGCAGCTAAAGGAGTTTGAGGAGCAACTGCGGAGGAAGAGGGCTGAATACGGCGAGAAGAT GCAGAACAAGCTGGCCGAAATCCACAAGGGAGCAGAGGAGAAGAAGGCAGTGGTCGAAGCAACCAAAGGTGAAGAGTATGTGAAGATTGAGGAAACTGCA AATAGATACAGAACCACTGGGAATACACCAAGGAAGTTCTTCAGTTGCTTAGGTTGTTAA
AA sequence Show only first row Show all	>Lus10001477 pacid=23157130 polypeptide=Lus10001477 locus=Lus10001477.g ID=Lus10001477.BGIv1.0 annot-version=v1.0 MGEEEPKVISAAADKASLEDSPVSPAAAAAVAENQMVSVVDEKRQVDDHREEGDHDQKDGSSPSKKSASSPVSETENEAAVAEKTTEKTPLNPVRRDAAL ARVQTDKRNALISAWEENEKAKIDNKTYKRLSAIESWENTKKAVVEVQLKEFEEQLRRKRAEYGEKMQNKLAEIHKGAEEKKAVVEATKGEEYVKIEETA NRYRTTGNTPRKFFSCLGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23750			Remorin family protein (.1.2)		Lus10001477 [exp]	0	1
AT1G49770	bHLH	ZOU, RGE1, bHLH...	ZHOUPI, RETARDED GROWTH OF EMB...		Lus10018723 [exp]	8.8	0.9454
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10011405 [exp]	10.1	0.9239
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Lus10005886 [exp]	10.4	0.9421
AT2G14095			unknown protein		Lus10025500 [exp]	10.4	0.9330
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10038896 [exp]	12.4	0.9394
					Lus10043397 [exp]	13.9	0.9351
AT5G36930			Disease resistance protein (TI...		Lus10002247 [exp]	15.2	0.9095
AT5G53110			RING/U-box superfamily protein...		Lus10032382 [exp]	15.2	0.9379
AT2G45720			ARM repeat superfamily protein...		Lus10036559 [exp]	16.9	0.9325
AT5G45690			Protein of unknown function (D...		Lus10005416 [exp]	18.3	0.9322

Compare expression of checked genes

Lus10001477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.