Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17710 381 / 1e-134 AtPEPC1 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) AT1G73010 372 / 2e-130 AtPPsPase1, ATPS2 pyrophosphate-specific phosphatase1, phosphate starvation-induced gene 2 (.1) AT4G29530 294 / 1e-100 Pyridoxal phosphate phosphatase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008479 [exp] 539 / 0 AT1G17710 378 / 3e-133 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10015632 [exp] 407 / 2e-144 AT1G17710 372 / 1e-130 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10037650 [exp] 397 / 1e-140 AT1G17710 359 / 1e-125 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10015634 [exp] 330 / 9e-115 AT1G17710 301 / 2e-103 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10037652 [exp] 275 / 2e-93 AT1G17710 255 / 2e-85 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10008573 [exp] 274 / 5e-93 AT4G29530 285 / 5e-98 Pyridoxal phosphate phosphatase-related protein (.1) Lus10032691 [exp] 63 / 5e-11 AT5G53770 479 / 3e-164 Nucleotidyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G196800 [exp] 409 / 1e-145 AT1G73010 397 / 2e-140 pyrophosphate-specific phosphatase1, phosphate starvation-induced gene 2 (.1) Potri.003G034600 [exp] 394 / 1e-139 AT1G17710 399 / 1e-141 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Potri.018G054800 [exp] 315 / 3e-108 AT1G17710 311 / 7e-107 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF06888 [flax] [poplar] Put_Phosphatase Putative Phosphatase
Representative CDS sequence Show only first row Show all	>Lus10001479 pacid=23157131 polypeptide=Lus10001479 locus=Lus10001479.g ID=Lus10001479.BGIv1.0 annot-version=v1.0 ATGGCGGGGATCGTGGTGGTATTCGACTTCGACAAAACAATCGTCGACGTAGACAGCGACAATTGGGTGATTGACGAACTGGGTTTCACCGATTTGTTCA ACCACCTACTTCCCACCATGCCTTGGAACTCCCTCATGGATAGGATGATGAAGGAGATTTACGAGCAGGGGAAAACCATTGACGACATAGTTGGAGTTCT GAACCGCATTCCAATTCACCCGAGGGTTGTTCCCGCCATCAAATCTGCTCATGCTTCAGGGTGTGAGTTGAGGATTGTGAGTGATGCGAACTTGTTCTTC ATAGAGACGATATTGGAGCACCATGGATTGAGGAGTTATTTCTCTGAAATTAATACCAACCCGGGATTTGTTGACGAACTAGGAAGGCTCAGGATTTCTC CTCACCATGATTTCATCGCTTCATCACATGGTTGCACCCTCTGTCCTCCAAACATGTGCAAGGGATTGGTCATGGAAAAGATGCAGGCTTCGCTGGCAAA AGAAGAAGAGGAATATTGCACAAGAATGATATATCTCGGAGATGGAGCAGGGGATTACTGCCCAAGCTTGAAGCTGACAGAAACTGACTATGTGATGCCA AGGAAGAACTTCCCAGTGTGGGATCTCATAAGCAAGAACCCAATGGTGATCAAGGCTCAGATTCACGAATGGAGCGACGGAGAAGAGCTCGAGCGTGTTC TGCTCGACATTGTCGCTACCGTCACAGACCACCACGAGTTGCTAGCTAATAACAGCAGTGGCGACGCCTGCAAGTTCCGTACAATCGCTCTCGTTCCTGT TGCTCCGTTCCCTCGCCATATCGCAGTTCCTCAGTAG
AA sequence Show only first row Show all	>Lus10001479 pacid=23157131 polypeptide=Lus10001479 locus=Lus10001479.g ID=Lus10001479.BGIv1.0 annot-version=v1.0 MAGIVVVFDFDKTIVDVDSDNWVIDELGFTDLFNHLLPTMPWNSLMDRMMKEIYEQGKTIDDIVGVLNRIPIHPRVVPAIKSAHASGCELRIVSDANLFF IETILEHHGLRSYFSEINTNPGFVDELGRLRISPHHDFIASSHGCTLCPPNMCKGLVMEKMQASLAKEEEEYCTRMIYLGDGAGDYCPSLKLTETDYVMP RKNFPVWDLISKNPMVIKAQIHEWSDGEELERVLLDIVATVTDHHELLANNSSGDACKFRTIALVPVAPFPRHIAVPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10001479 [exp]	0	1
AT3G43110			unknown protein		Lus10020796 [exp]	3.2	0.8599
AT5G20790			unknown protein		Lus10007378 [exp]	4.9	0.8387
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10019415 [exp]	5.8	0.8535
AT3G19660			unknown protein		Lus10033765 [exp]	6.2	0.8496
AT2G26520			unknown protein		Lus10020993 [exp]	6.5	0.7986
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10043272 [exp]	12.7	0.8308
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10030095 [exp]	15.6	0.8072
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Lus10016359 [exp]	15.7	0.7998
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031153 [exp]	16.7	0.8122
AT1G61600			Protein of unknown function (D...		Lus10035372 [exp]	17.9	0.8178

Compare expression of checked genes

Lus10001479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.