Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03070 686 / 0 IMPA-9 importin alpha isoform 9 (.1) AT3G06720 196 / 5e-56 IMPA1, IMPA-1, AIMPALPHA, ATKAPALPHA, AT-IMP importin alpha isoform 1 (.1.2) AT1G09270 193 / 6e-55 IMPA-4 importin alpha isoform 4 (.1.2.3) AT1G02690 191 / 3e-54 IMPA-6 importin alpha isoform 6 (.1.2) AT4G16143 190 / 6e-54 IMPA-2 importin alpha isoform 2 (.1.2) AT4G02150 189 / 9e-54 IMPA-3, MOS6, ATIMPALPHA3 MODIFIER OF SNC1, 6, IMPORTIN ALPHA ISOFORM 3, IMPORTIN ALPHA 3, ARM repeat superfamily protein (.1) AT3G05720 172 / 2e-47 IMPA-7 importin alpha isoform 7 (.1) AT5G49310 169 / 3e-46 IMPA-5 importin alpha isoform 5 (.1) AT5G52000 126 / 2e-31 IMPA-8 importin alpha isoform 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008480 [exp] 914 / 0 AT5G03070 738 / 0.0 importin alpha isoform 9 (.1) Lus10031398 [exp] 202 / 2e-58 AT3G06720 925 / 0.0 importin alpha isoform 1 (.1.2) Lus10010933 [exp] 202 / 3e-58 AT3G06720 922 / 0.0 importin alpha isoform 1 (.1.2) Lus10037722 [exp] 195 / 1e-55 AT3G06720 884 / 0.0 importin alpha isoform 1 (.1.2) Lus10010028 [exp] 193 / 3e-55 AT3G06720 862 / 0.0 importin alpha isoform 1 (.1.2) Lus10036452 [exp] 192 / 4e-55 AT4G16143 825 / 0.0 importin alpha isoform 2 (.1.2) Lus10016850 [exp] 192 / 7e-55 AT4G16143 858 / 0.0 importin alpha isoform 2 (.1.2) Lus10036330 [exp] 186 / 2e-52 AT3G06720 874 / 0.0 importin alpha isoform 1 (.1.2) Lus10041124 [exp] 181 / 4e-51 AT4G16143 733 / 0.0 importin alpha isoform 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G086600 [exp] 736 / 0 AT5G03070 801 / 0.0 importin alpha isoform 9 (.1) Potri.008G214100 [exp] 201 / 7e-58 AT4G16143 881 / 0.0 importin alpha isoform 2 (.1.2) Potri.005G020400 [exp] 201 / 7e-58 AT3G06720 880 / 0.0 importin alpha isoform 1 (.1.2) Potri.013G010900 [exp] 199 / 2e-57 AT3G06720 869 / 0.0 importin alpha isoform 1 (.1.2) Potri.010G001400 [exp] 199 / 4e-57 AT4G16143 849 / 0.0 importin alpha isoform 2 (.1.2) Potri.013G007300 [exp] 192 / 1e-54 AT1G09270 877 / 0.0 importin alpha isoform 4 (.1.2.3) Potri.002G199600 [exp] 189 / 2e-53 AT3G06720 858 / 0.0 importin alpha isoform 1 (.1.2) Potri.014G124200 [exp] 187 / 9e-53 AT3G06720 868 / 0.0 importin alpha isoform 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10001480 pacid=23157126 polypeptide=Lus10001480 locus=Lus10001480.g ID=Lus10001480.BGIv1.0 annot-version=v1.0 ATGGCGGAAGAGGGATTGGTTTCTCTGAAGCGAGACCCGATCAAGTCATCACTTAGTACCGCAGCTACGCAGAAGAGGCGGCAAAATGCAGTTGCAGTTA GTAAAGAACGAAGAGAGTCCCTGGTGAGAGCCAAGCGCATGTGCAGGGCGGGGCCAAGTGGTGATGATGATCTGGACAGCGAGATGATGGTTGATGAAGA AGAGGAATCAATTTTGAATTCTCAAGCTTCTGCAGCTGTGGAAGAGCTGAAGTCTGCTGTTGCTTTTCAAGGTAAAGGAGCGATGCAGAAGGTAGTTACT GCGCTTCGAGAGCTAAGGCGCATTCTGTCTCGGTCAGAATTGCCTCCGATCGAAGCTGCTCTTGAAGCCGGTGCAATCCCACCACTCGTCCACTGTCTAG CCTTTGGTTCACCAGACGAACAATTGCTCGAGTCCGCTTGGTGCCTAACAAACATCGCTGCTGGCAAACCAGACGAAACAAAGGCGTTAGTGCCTGCATT GCCGTTGCTTATTGCACATCTCGGAGAAAAGAGTCCGTCCTCTGTCGCCGAGCAGTGCGCGTGGGCATTGGGAAACGTGGCCGGGGAAGGAGCGGAGTTA CGCAACGTCTTGTTATCGCAAGGCGCGTTACTACCTCTTGCAAGAATGATGCTTCCTAACAAAGGCTCGACCGTACGGACAGCAGCTTGGGCGCTATCGA ACCTGATTAAAGGACCCGAACCTATGGCTGCGAAGAAACTGATCGAAGTGGAAGGAGTACTGGAGGCCATTACTCGCCACTTGAGGAAGGCTGACGATGA GCTGGCAACTGAGGTGGCATGGGTAGTTGTATACCTCTCGGCACTGTCGAATCGCGCTACTTCCATGCTGGTGAAATCCAACGTCCACGAATTGCTCTTG GAAAGACTAGCGACGTCGAGTAGTTTGCAGCTGCTGATTCCGGTTTTAAGGAGTCTTGGAAACCTTGTAGCAGGCGATTCCCAAACCATTTTCGCAGGTA ATATTATCGGCATCCTGACTAAATATCTGAAGAGCGAGCATCGAGTTTTAAAGAAGGAAGCTGCTTGGATGCTGTCAAACGTTGCAGCTGGTTCAGTGGA ACACAAGCAATTGATATACTCGAGCGAGGCTGTGCCGTTGTTACTCAGCCTTCTTTCAACTGCCACATTTGATGTACGAAAGGAAGTAGCATACGTTTTG GGTAACCTCTGTGTGGCAGCAACCACCGAAAGCAACGGGAAGCCATGTGTGATTGTCGACCACTTGGTTTCCCTCGTCAGGAAAGGGTGTCTCCGTGGGT TTGTCAACTTGGTTCGCTCTGCTGATACAGAGGCTGCGAAGCTAGGGCTTCAGTTCATGGAGTTGGTTTTGAGAGGGATGCCGAATGGGGAAGGGCCGAA GCTTGTGGAGAGAGAGGACGGGATCGAAGCCATGGAGAGGTTTCAGTTTCATGAGAATGAAGACTTGAGGAATATGGCGAATGGTTTGGTTGACAGATAC TTCGGCGAGGACTACGGTATCGAGCAATAG
AA sequence Show only first row Show all	>Lus10001480 pacid=23157126 polypeptide=Lus10001480 locus=Lus10001480.g ID=Lus10001480.BGIv1.0 annot-version=v1.0 MAEEGLVSLKRDPIKSSLSTAATQKRRQNAVAVSKERRESLVRAKRMCRAGPSGDDDLDSEMMVDEEEESILNSQASAAVEELKSAVAFQGKGAMQKVVT ALRELRRILSRSELPPIEAALEAGAIPPLVHCLAFGSPDEQLLESAWCLTNIAAGKPDETKALVPALPLLIAHLGEKSPSSVAEQCAWALGNVAGEGAEL RNVLLSQGALLPLARMMLPNKGSTVRTAAWALSNLIKGPEPMAAKKLIEVEGVLEAITRHLRKADDELATEVAWVVVYLSALSNRATSMLVKSNVHELLL ERLATSSSLQLLIPVLRSLGNLVAGDSQTIFAGNIIGILTKYLKSEHRVLKKEAAWMLSNVAAGSVEHKQLIYSSEAVPLLLSLLSTATFDVRKEVAYVL GNLCVAATTESNGKPCVIVDHLVSLVRKGCLRGFVNLVRSADTEAAKLGLQFMELVLRGMPNGEGPKLVEREDGIEAMERFQFHENEDLRNMANGLVDRY FGEDYGIEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Lus10001480 [exp]	0	1
AT3G16310			mitotic phosphoprotein N' end ...		Lus10037573 [exp]	5.7	0.8064
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10001726 [exp]	6.2	0.7463
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10020391 [exp]	12.7	0.7669
AT3G13940			DNA binding;DNA-directed RNA p...		Lus10020738 [exp]	13.3	0.8120
AT4G12640			RNA recognition motif (RRM)-co...		Lus10025188 [exp]	17.5	0.7428
AT1G31220			Formyl transferase (.1)		Lus10013428 [exp]	20.9	0.8027
AT1G80930			MIF4G domain-containing protei...		Lus10003392 [exp]	23.5	0.7888
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10004946 [exp]	26.0	0.8017
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10003795 [exp]	29.5	0.7548
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10037620 [exp]	34.6	0.8017

Compare expression of checked genes

Lus10001480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.