Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63300 271 / 4e-82 Myosin heavy chain-related protein (.1) AT5G41140 228 / 2e-66 Myosin heavy chain-related protein (.1.2) AT5G52280 116 / 7e-28 Myosin heavy chain-related protein (.1) AT1G22060 64 / 1e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008482 [exp] 644 / 0 AT1G63300 406 / 4e-124 Myosin heavy chain-related protein (.1) Lus10001481 [exp] 530 / 4e-179 AT5G41140 476 / 1e-150 Myosin heavy chain-related protein (.1.2) Lus10024517 [exp] 344 / 6e-109 AT5G41140 482 / 9e-154 Myosin heavy chain-related protein (.1.2) Lus10008012 [exp] 340 / 2e-107 AT5G41140 473 / 3e-150 Myosin heavy chain-related protein (.1.2) Lus10038860 [exp] 87 / 5e-18 AT1G63300 614 / 0.0 Myosin heavy chain-related protein (.1) Lus10014980 [exp] 83 / 1e-16 AT1G63300 537 / 9e-179 Myosin heavy chain-related protein (.1) Lus10039218 [exp] 79 / 1e-15 AT5G52280 618 / 0.0 Myosin heavy chain-related protein (.1) Lus10027462 [exp] 76 / 2e-14 AT1G63300 612 / 0.0 Myosin heavy chain-related protein (.1) Lus10033461 [exp] 60 / 3e-09 AT1G22060 978 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124600 [exp] 306 / 2e-94 AT1G63300 810 / 0.0 Myosin heavy chain-related protein (.1) Potri.001G106700 [exp] 285 / 3e-87 AT1G63300 603 / 0.0 Myosin heavy chain-related protein (.1) Potri.015G143800 [exp] 189 / 1e-52 AT5G52280 594 / 0.0 Myosin heavy chain-related protein (.1) Potri.012G141200 [exp] 172 / 6e-47 AT5G52280 322 / 7e-95 Myosin heavy chain-related protein (.1) Potri.002G091700 [exp] 64 / 1e-10 AT1G22060 1546 / 0.0 unknown protein Potri.005G170066 [exp] 62 / 4e-10 AT1G22060 1031 / 0.0 unknown protein Potri.008G029800 [exp] 47 / 3e-05 AT1G22060 117 / 5e-26 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001482 pacid=23157134 polypeptide=Lus10001482 locus=Lus10001482.g ID=Lus10001482.BGIv1.0 annot-version=v1.0 ATGGAGGATGAATTGGAGCGTCAATCCCAAGCATTCGAATCTGATCTTGAGACGATCACACGAGAAAGAGTCGAGCAGGAGCAAAGAGCCATCCGGGCGG AGGAAGCCTTGAAGTTGACCAGATGGAAAAATTCCAACACGGCCGAGAAGCTACAGGAGGAGTTCAAAAGGTTGTCTAAGCAGATGGCATCTACATTCGA AGCGAACGAGAACGTAGCGATGAAGGCAATCGCAGAAGCTAACGAAGTCAGGGTTCAGAAAATTCAACTTGAAGACATGCTTAGGAGAGCCAAGTCAGAA CTCCAGTCTGTTAAGGATGACTATGACAAAAAATTGCTAGAGCTCACCAACCAGTTGGACTTGAAATCTCGTCAAGTTGAGGAAGTTCTAGGTGGAACTT CCAATCAGAAGGTTCAGAAGCTGCAAGCTGAAATCGAAAAGCTTGCGAAAGAAAATAACCTGTTCTCCATACAAGTAGAGGAAATGAAGGCCTCCATCAA GAGCCATGAAGAACTGGAGAATAGTATTGCTATACTGAAGAAAGAAGCAGAGAAATCGGCAGAGGGTCTACGCAAGACAAGATCAATCAAGGATGCAGAA GTGGAGAGACTACAATGTCAATGTGACGACTTGAAACAATCTCTCATTGAAGACGAGACTGAGAAGGAAAAACTCAGAATGCAGTTGGTCTGCTTAAAGG GTGACCTCAAGAAAAAGGATGAAGCTTTGATCAGTGCCGAAAAGAAGGTCAAGGAAAGCAACAGACGTGCACTAATCGCTCCGAGAAACAACAAGTCTGC TGCTGCTCTAGTTTCTAATGGTACCAAAGAGGTCTCAAATCTCAAGGAGAAAATTAAACTGCTTGAGATGCAGATAAGATCAAAGGAAGCTGCTTTGGAG ACATCTGCTAGTTCATTTATGCACAAGGAAAGAGATCTTATGGACAAGATTGATGAGCTGGAGGAAAGAGTGGATGAACTTAACCAAAAGCTGAATGCAA ACAGCACCAACGACGAGAAAGATTTCAATGCCGAAGAGCTGGTGAGGGAACTGGTATCGTTGAAGGAGAGGAATGAAGAGATGGGGAGTGAGCTATTGGA GATGCAAGAGAGGTATTCAGAGATAAGTCTCAAGTTTGCAGAAGTAGAAGGTGAGAGGCAAAAGCTTGTGATGACTGTAAGAAGCTTGAAGAATGCCAGA AAGGACCTCAAACAATGA
AA sequence Show only first row Show all	>Lus10001482 pacid=23157134 polypeptide=Lus10001482 locus=Lus10001482.g ID=Lus10001482.BGIv1.0 annot-version=v1.0 MEDELERQSQAFESDLETITRERVEQEQRAIRAEEALKLTRWKNSNTAEKLQEEFKRLSKQMASTFEANENVAMKAIAEANEVRVQKIQLEDMLRRAKSE LQSVKDDYDKKLLELTNQLDLKSRQVEEVLGGTSNQKVQKLQAEIEKLAKENNLFSIQVEEMKASIKSHEELENSIAILKKEAEKSAEGLRKTRSIKDAE VERLQCQCDDLKQSLIEDETEKEKLRMQLVCLKGDLKKKDEALISAEKKVKESNRRALIAPRNNKSAAALVSNGTKEVSNLKEKIKLLEMQIRSKEAALE TSASSFMHKERDLMDKIDELEERVDELNQKLNANSTNDEKDFNAEELVRELVSLKERNEEMGSELLEMQERYSEISLKFAEVEGERQKLVMTVRSLKNAR KDLKQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63300			Myosin heavy chain-related pro...		Lus10001482 [exp]	0	1
AT4G37820			unknown protein		Lus10011571 [exp]	2.8	0.9146
AT1G68585			unknown protein		Lus10035025 [exp]	7.5	0.9263
AT1G07120			unknown protein		Lus10031863 [exp]	9.9	0.9165
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Lus10022399 [exp]	15.9	0.9192
AT1G56720			Protein kinase superfamily pro...		Lus10006215 [exp]	19.4	0.8567
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10022233 [exp]	22.0	0.8676
AT1G68585			unknown protein		Lus10021686 [exp]	22.3	0.9122
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Lus10027761 [exp]	23.2	0.9145
AT3G30380			alpha/beta-Hydrolases superfam...		Lus10036842 [exp]	24.9	0.8713
AT1G63300			Myosin heavy chain-related pro...		Lus10008482 [exp]	25.0	0.9029

Compare expression of checked genes

Lus10001482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.