Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39680 655 / 0 EMB2744 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 449 / 1e-147 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G27610 446 / 6e-146 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 435 / 1e-139 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 424 / 3e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 431 / 1e-138 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09950 424 / 6e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 413 / 1e-134 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G12770 410 / 4e-134 MEF22 mitochondrial editing factor 22 (.1) AT4G30700 410 / 9e-133 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008483 [exp] 546 / 0 AT5G39680 364 / 2e-121 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 457 / 4e-151 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10035164 [exp] 447 / 9e-147 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 442 / 8e-145 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030908 [exp] 448 / 1e-142 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10017446 [exp] 433 / 3e-141 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 436 / 6e-140 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031989 [exp] 421 / 5e-138 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030581 [exp] 436 / 7e-138 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G084900 [exp] 805 / 0 AT5G39680 782 / 0.0 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 479 / 1e-157 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 469 / 1e-155 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G155100 [exp] 468 / 6e-155 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 461 / 6e-150 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 447 / 7e-148 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.015G018700 [exp] 444 / 7e-145 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 432 / 6e-143 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 443 / 1e-142 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G244500 [exp] 430 / 1e-141 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10001483 pacid=23157132 polypeptide=Lus10001483 locus=Lus10001483.g ID=Lus10001483.BGIv1.0 annot-version=v1.0 ATGTCGCTCACTCTTGCCAAGTTGAACAAGCTCTTGAAGCTCTCGGCGGATGCAAAAAGCCTCAGAGCAGGTAAAGCGATTCATTCCCATTTAATCTTAT CGAATCACTGCATTGCCAAGAACTCCATCGAGGCCAACTCTTTAATCAACTTCTACTCGAAATGCGGCCGTGTTTCCGATGCCCGCCACTTGTTCGACGA ATTGCGGGAGCGAAACGTTGTTTCATGGGCTGCATTGATGGCTGGGTATATGCAGTGCGGGAAGCCTTTAGAAGTTATTGGTTTGTTCAGAGACATGGTT TCAGAGTGTGGAAAAGTGATGCCCAACGAGTACGTTTTCGCTACTGTTGTTTCTTCCTGTTCTTTCAGCAGGGGACTTGAGGTGGGCATGCAGTGCCATT CCCAGGTGCTTAAGTTGGGCTTGGTTGCTCATGATTACGTCCGTGATGCTTTGTTGGATATGTATATTAAGTGCTCTCGTGTTGGTGAAGCGATTCGGTT GTTGTGGGATGCGATGCCTGGAAACAGTAGCTATTCTTATCAGTTGGTTCTAAATGGAGTTGTGGAACAGGGGTATTTGGAGCAAGGTTTGGACATTGTA AGGAGAATGGATGTTGAATGGGATGGTTGTTCTTGGGTTAGTGTTATTGCGCTTTGTGCTTCTCTTAAGGATTCGAGATTAGCGAGCCAAGTTCATGGTA ACTTGATCAGAAGTAATAATAATCTTGAATGTGATATGTACGTCAACAGTGCTCTCATCAACATGTATGGAAAATGCGGGCACCCTCTGACTGCAAGGAG AGTTTTCGAAAATTTGCATGATAGGAATGTTGTGTTATGGACGTCTCTCATGGCTGCTTATTCCCAGAATGACCTGTTCGAGGAGGCGCTGAGTTTATTC ACTGCAATGGAAATCAGCAATGTTAGACCGAATGAGTTTACATTGGCTGTGTCCTTCAATGCTAGTGCAGGGTTGTCTACACTGAGGAATGGATGTCTGT TGCATGGCCGTGCTATGAAGGCCGGTTTTATTGATCATGTGAGTGTTGGAAGTGCATTGATCGATATGTACGCCAAAAGTGGAAACATCGATGCAGCAAG TCGTGTGTTTTCAGGTTTGAAGCATCGTAGCACCATCTCTTGGAATGCAATCATATGCGGGTTTTCACACCATGGACTTGGAAAGGAGGCACTTTTGGTG TTTCAGGATATGCTGGCTGCTGAAGAAGTCTGTCCTAACCATGTTACTTTCGTCGGTGTGCTATCTGCCTGTGCTAATTTGGGCTTAGTGGAAAAAGGTT TCTACTTTTTTAACAACTTAATGAAGGCGATGGGTGTTGAGCCTGGATTAGAGCATCACACATGTATGGTTGGGCTTCTAGGGAAAGCTGGGAAACTAGA AGAGGCCAAGAATTTTATGATGTCCAGGATTGAGATATGGGATGTTGTTGCGTGGCGAACTCTGCTCAATGCTTGCCATATTCACAAGAAGTATGATTTA GCCGAGCAGGTTGCAAAATCCATTCTCGAGATGGACCCTAGGGACATGGGGTCATATACACTGCTATCGAATGTTTACGCTAGGAGAAGTAGGTGGGATT TAGTTGCGGAGATCCGGAAGCTGATGAAGGATAGAAAAGTAAGGAAGGAGCCCGGTTCGAGCTGGATCGAGATACAAAACGTCACTCATGTATTTGTTTC AGATGACAAGAAACATCCAGAAAGCAGTAAGATTTACGAGAAGGTAAAGGAAATCATTGCACTGATCAAGCCTTTGGGGTATGTTCCTGATGTTGACCTT GTTCTTCATGATGTTGAGGATGAGCAGAAGGAAGATCACCTGTGTTATCACAGTGAAAAGTTGGCTATGGCTTACGGTATCATGAAACTGCCTTCCCGTG CTCCTATCGTTGTGATTAAGAATCTTAGGATGTGTGATGATTGCCACTCAGCTGCCGGATTCATTTCGAAACTGATGCTTAGGTCGATAATCATTAGAGA TGCCAAAAGGTTCCATCATTTTCAGGATGGCTCCTGTTCTTGTGGAGATTACTGGTGA
AA sequence Show only first row Show all	>Lus10001483 pacid=23157132 polypeptide=Lus10001483 locus=Lus10001483.g ID=Lus10001483.BGIv1.0 annot-version=v1.0 MSLTLAKLNKLLKLSADAKSLRAGKAIHSHLILSNHCIAKNSIEANSLINFYSKCGRVSDARHLFDELRERNVVSWAALMAGYMQCGKPLEVIGLFRDMV SECGKVMPNEYVFATVVSSCSFSRGLEVGMQCHSQVLKLGLVAHDYVRDALLDMYIKCSRVGEAIRLLWDAMPGNSSYSYQLVLNGVVEQGYLEQGLDIV RRMDVEWDGCSWVSVIALCASLKDSRLASQVHGNLIRSNNNLECDMYVNSALINMYGKCGHPLTARRVFENLHDRNVVLWTSLMAAYSQNDLFEEALSLF TAMEISNVRPNEFTLAVSFNASAGLSTLRNGCLLHGRAMKAGFIDHVSVGSALIDMYAKSGNIDAASRVFSGLKHRSTISWNAIICGFSHHGLGKEALLV FQDMLAAEEVCPNHVTFVGVLSACANLGLVEKGFYFFNNLMKAMGVEPGLEHHTCMVGLLGKAGKLEEAKNFMMSRIEIWDVVAWRTLLNACHIHKKYDL AEQVAKSILEMDPRDMGSYTLLSNVYARRSRWDLVAEIRKLMKDRKVRKEPGSSWIEIQNVTHVFVSDDKKHPESSKIYEKVKEIIALIKPLGYVPDVDL VLHDVEDEQKEDHLCYHSEKLAMAYGIMKLPSRAPIVVIKNLRMCDDCHSAAGFISKLMLRSIIIRDAKRFHHFQDGSCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Lus10001483 [exp]	0	1
AT1G06710			Tetratricopeptide repeat (TPR)...		Lus10026747 [exp]	4.6	0.7397
AT1G07615			GTP-binding protein Obg/CgtA (...		Lus10040813 [exp]	9.5	0.6836
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Lus10018508 [exp]	11.1	0.6332
AT4G35850			Pentatricopeptide repeat (PPR)...		Lus10003653 [exp]	13.5	0.7048
AT5G13830			FtsJ-like methyltransferase fa...		Lus10040283 [exp]	14.5	0.7319
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10011504 [exp]	15.0	0.7633
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10041417 [exp]	15.0	0.7335
AT4G15640			unknown protein		Lus10012810 [exp]	17.3	0.7480
					Lus10031576 [exp]	20.4	0.5732
AT1G73400			Pentatricopeptide repeat (PPR)...		Lus10034419 [exp]	23.5	0.5559

Compare expression of checked genes

Lus10001483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.