Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14260 124 / 3e-35 Protein of unknown function (DUF567) (.1) AT1G63410 119 / 3e-33 Protein of unknown function (DUF567) (.1) AT1G53870 115 / 1e-31 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G53890 115 / 1e-31 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2), Protein of unknown function (DUF567) (.3) AT1G53880 109 / 1e-27 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53900 109 / 1e-27 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT3G15810 70 / 1e-14 Protein of unknown function (DUF567) (.1) AT2G38640 67 / 1e-13 Protein of unknown function (DUF567) (.1) AT1G80120 67 / 2e-13 Protein of unknown function (DUF567) (.1) AT5G41590 67 / 3e-13 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008485 [exp] 357 / 7e-127 AT3G14260 132 / 4e-38 Protein of unknown function (DUF567) (.1) Lus10028756 [exp] 74 / 9e-16 AT5G41590 194 / 7e-62 Protein of unknown function (DUF567) (.1) Lus10017526 [exp] 70 / 3e-14 AT5G41590 194 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10007423 [exp] 65 / 1e-12 AT2G38640 187 / 4e-60 Protein of unknown function (DUF567) (.1) Lus10038097 [exp] 64 / 2e-12 AT3G15810 216 / 8e-71 Protein of unknown function (DUF567) (.1) Lus10010681 [exp] 60 / 7e-11 AT2G38640 184 / 6e-59 Protein of unknown function (DUF567) (.1) Lus10025253 [exp] 46 / 5e-06 AT5G01750 169 / 4e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G106300 [exp] 192 / 5e-62 AT1G63410 132 / 8e-39 Protein of unknown function (DUF567) (.1) Potri.003G125300 [exp] 189 / 1e-60 AT3G14260 137 / 3e-40 Protein of unknown function (DUF567) (.1) Potri.001G106400 [exp] 142 / 2e-42 AT1G63410 178 / 1e-56 Protein of unknown function (DUF567) (.1) Potri.003G072200 [exp] 138 / 5e-41 AT3G14260 173 / 2e-54 Protein of unknown function (DUF567) (.1) Potri.003G125200 [exp] 133 / 4e-39 AT1G63410 164 / 3e-51 Protein of unknown function (DUF567) (.1) Potri.006G113800 [exp] 81 / 2e-18 AT1G80120 112 / 3e-30 Protein of unknown function (DUF567) (.1) Potri.016G143500 [exp] 77 / 4e-17 AT1G80120 105 / 7e-28 Protein of unknown function (DUF567) (.1) Potri.016G143000 [exp] 74 / 4e-16 AT2G38640 214 / 1e-70 Protein of unknown function (DUF567) (.1) Potri.003G032500 [exp] 72 / 2e-15 AT3G15810 264 / 2e-90 Protein of unknown function (DUF567) (.1) Potri.006G113400 [exp] 70 / 2e-14 AT2G38640 214 / 5e-71 Protein of unknown function (DUF567) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10001484 pacid=23157133 polypeptide=Lus10001484 locus=Lus10001484.g ID=Lus10001484.BGIv1.0 annot-version=v1.0 ATGTCCAAAATCCATCCCATCTTCCCATCATCGGCTGCAGCATCGTCTTCGTGTTCCTCCGATGTTACCACGAGCACCGAAACGTTCACCATGTGGATGA AGTCCCTAGTGATGCAAGGCAACGGATGCACCATTTACGACCAAAACGGCGCCGTCGTCTACCGGGTCGACAACTACCAGAAGAAGGGCGGCAACGAGGT CTACCTTATGGATCTCAAGGGAAATCTCCTCTTCACCATCCTCAAAACGAAATTGTGGCCGTTCAACAAGCAGTGGAAAGGGTACAAGCGGGACGAGGAG ACGGCGTCGTTTCGGGTGGTGAGGAAAAGGCGCGGTGGGTTTTTGGGGACTGAGTGGTGCTGTAAGATTAGTTTTCGCGACGGGACAAATGGTGGTAACG AATTGTGTTGGTATAAAATGGAAGCGTCGTCTGCGGGGAAAGTGACGGCGTTTAAGATAACTGACGGAGTTAGTGGAGGGTTAGTGGCAGAGGCGAAGAG GAAGCTGCAGTCTGGGGTCGGGTCGAGGTCCGGAGTTATGTTGGGAGATGATGTGTTGACGCTAGTGGTTCAACCGGGAATCGACCGTTGTTTCGTGATG GCTTTAGCGACAGTCTACGGGTTGATGAGCCGTAGATTATGA
AA sequence Show only first row Show all	>Lus10001484 pacid=23157133 polypeptide=Lus10001484 locus=Lus10001484.g ID=Lus10001484.BGIv1.0 annot-version=v1.0 MSKIHPIFPSSAAASSSCSSDVTTSTETFTMWMKSLVMQGNGCTIYDQNGAVVYRVDNYQKKGGNEVYLMDLKGNLLFTILKTKLWPFNKQWKGYKRDEE TASFRVVRKRRGGFLGTEWCCKISFRDGTNGGNELCWYKMEASSAGKVTAFKITDGVSGGLVAEAKRKLQSGVGSRSGVMLGDDVLTLVVQPGIDRCFVM ALATVYGLMSRRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14260			Protein of unknown function (D...		Lus10001484 [exp]	0	1
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10008291 [exp]	2.8	0.9682
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10028227 [exp]	3.2	0.9774
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Lus10041711 [exp]	3.2	0.9669
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10032006 [exp]	3.9	0.9709
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	3.9	0.9787
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10005697 [exp]	5.2	0.9644
AT1G16350			Aldolase-type TIM barrel famil...		Lus10036443 [exp]	6.0	0.9662
AT5G38760			Late embryogenesis abundant pr...		Lus10003046 [exp]	7.5	0.9531
AT4G27310	CO		B-box type zinc finger family ...		Lus10018513 [exp]	8.8	0.9327
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Lus10024038 [exp]	10.2	0.9557

Compare expression of checked genes

Lus10001484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.