Plant FIBer expression Database

Lus10001487 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G41190 668 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008488
[exp]
1115 / 0 AT5G41190 688 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G124700
[exp]
726 / 0 AT5G41190 692 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0167 Zn_Beta_Ribbon PF08772 NOB1_Zn_bind Nin one binding (NOB1) Zn-ribbon like
Representative CDS sequence
>Lus10001487 pacid=23157127 polypeptide=Lus10001487 locus=Lus10001487.g ID=Lus10001487.BGIv1.0 annot-version=v1.0
ATGGAGGAAGATACGCCGACAACGACGACGACGAATCCATCTCCGCCTCCTCCCGCCGCTGCTGCTGCTGCTCCTCCGATGTGCTGGAGTAACGCCGTGA
AGAGCCAGCCTCCGCCGGCGCCGAAGCCCCAGACCCCTACAGTCTCTAGCCAGGTGTTCGTTGAGAGCTGCAAGTCGACAAAGGGTATTGCGGTGGCCGT
CATCGATGCTAATGCAATGATTCAAGGTGGAGAGAATCTCCACAACCTCGCCGATAAGTTCGTCACCGTTCCTGAAGTTCTCAATGAAATCCGTGACCCT
GTTTCCCGCCATCGCCTTACTCTCATCCCTTTCACCATCGATTCGATGGAGCCAACTCCTGAAGCGCTTAATAAAGTGATCAAGTTTGCTAAGGCGACTG
GTGACTTGCAGACCCTGTCAGATGTGGATCTTAAGCTCATTGCCCTTACGTACTCTTTGGAGGGGCAGATCCATGGCACTCAACATCTTCGAGATGCTCC
GCCCCCTGTCCAGACTGTCAATGTGAAGAGGTTGCCCGAGAAGGAAATGCCAGGATGGGGATCTAATGTTCCTAATTTGGAAGAGTGGGAGGCACTGGAA
CAGGAGTCTGGGGATGGAGTGAACTTGAACTCGAGAATTCTTCCCTTGAAAGATGTGGACTTGAATGCTATTGTAACTGATGACAAATCTGAAGCTGGAA
GTGTTGCGACGAAAGGAGATGAAGATTGCTCTGATAATCAGGAAGATATAGAGGATGGTAGAAGGAAATATAAGAGGTACCCGGCTAAGAAAATAGAGGT
GAACATTGAAGGGAAGAAGATGGTGGTAGCTGGTATTGATGCTTCTCAGGGGAAAATTGACGATGATGGTCATGGTTGGTTGCCTGCTGTTAGCAAGAGT
ACTCATAGGAAATATCTTAGAAGGAAAGCCAAGTATGAACACTCTCAAGCTTTGTACGAGAAAGATTGTCAGCAAGATATGGAGGCACAATTGGCTAATG
ATAAGAAGAAGGAAACAAGTAACTCTGACCAGCTTCCGACTCAAGGGTTGGAAGCAAATACTGCAAATGGAGCCTCCAAACAGGAGGGTGAAGAGGGGAA
CAATGGAGATGAAAATCTGACCTCAATCCTGAAACAAATGAGAGTGGAAGAAGAATCATTGAAGACTCTTCCGGAAGGCAATGAAGAGAACAGTGATTCT
AATGAAGATACACAACTTCCAGGAGAAGACATTGATGTCACAAATGCAGAGCTAGATACGTTTGAGACTTTGAGTGAAATCAATGGAAGTATTGATACTC
GCTGCGAGGATGACGGTACTAGTGAGCAGAGTTGGATGCTTCGATCTTTGTCAGAGTCGAGTGTTGCTTGTGTAACTGGTGACTTCGCTATGCAGAATGT
TCTCCTACAAATTGGTTTACGCCTTGTGGCACCAGGAGGGATGCAAATTCGGGAGCTAAAAAGGTGGATTCTGAAATGCCATGCATGCTACACAGTCACT
GCTGAGATTGGCAGGCTCTTCTGTCCCAAATGTGGAAACGGTGGCACACTTCAAAAAGTAGCAGTCACGGTTGGTGAAAATGGCATAACTTTAGAAGCAC
GTCGGCCTCGTACCTCATTACGTGGTACAAAGTACTCCGTGCCTATGCCAAAAGGAGGAAGGGACGCCATTACCAAGAACCCAATTCTCCGCGAGGATCA
AGTCCCACAAAAGTTCCTCCGGCCTAAGACAAAGAAGAAAGTCAACATACAGGACGATGACTTATTTGTTTCATCGGGTGAAGACTTCTTTGTTTCATCG
GGTGACATCTTCGGGAAAGTCGATAAAAGGACTGCTTTCAAGCCACCTGTAGGGAAAGCATTTACACTCTATGGTGGTAGGAAGAACCCTAATGACAATC
ACTATGCCCGCCATAATAATAGTTAG
AA sequence
>Lus10001487 pacid=23157127 polypeptide=Lus10001487 locus=Lus10001487.g ID=Lus10001487.BGIv1.0 annot-version=v1.0
MEEDTPTTTTTNPSPPPPAAAAAAPPMCWSNAVKSQPPPAPKPQTPTVSSQVFVESCKSTKGIAVAVIDANAMIQGGENLHNLADKFVTVPEVLNEIRDP
VSRHRLTLIPFTIDSMEPTPEALNKVIKFAKATGDLQTLSDVDLKLIALTYSLEGQIHGTQHLRDAPPPVQTVNVKRLPEKEMPGWGSNVPNLEEWEALE
QESGDGVNLNSRILPLKDVDLNAIVTDDKSEAGSVATKGDEDCSDNQEDIEDGRRKYKRYPAKKIEVNIEGKKMVVAGIDASQGKIDDDGHGWLPAVSKS
THRKYLRRKAKYEHSQALYEKDCQQDMEAQLANDKKKETSNSDQLPTQGLEANTANGASKQEGEEGNNGDENLTSILKQMRVEEESLKTLPEGNEENSDS
NEDTQLPGEDIDVTNAELDTFETLSEINGSIDTRCEDDGTSEQSWMLRSLSESSVACVTGDFAMQNVLLQIGLRLVAPGGMQIRELKRWILKCHACYTVT
AEIGRLFCPKCGNGGTLQKVAVTVGENGITLEARRPRTSLRGTKYSVPMPKGGRDAITKNPILREDQVPQKFLRPKTKKKVNIQDDDLFVSSGEDFFVSS
GDIFGKVDKRTAFKPPVGKAFTLYGGRKNPNDNHYARHNNS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G41190 unknown protein Lus10001487
[exp]
0 1
AT4G11420 ATTIF3A1, ATEIF... eukaryotic translation initiat... Lus10015204
[exp]
1.4 0.9620
AT3G62870 Ribosomal protein L7Ae/L30e/S1... Lus10012463
[exp]
3.2 0.9660
AT5G05520 Outer membrane OMP85 family pr... Lus10017441
[exp]
3.3 0.9539
AT5G35910 Polynucleotidyl transferase, r... Lus10005691
[exp]
7.5 0.9557
AT1G74050 Ribosomal protein L6 family pr... Lus10039084
[exp]
8.1 0.9605
AT1G55870 ATPARN, AHG2 ARABIDOPSIS THALIANA POLY\(A\)... Lus10033691
[exp]
8.2 0.9307
AT4G34110 PABP2, PAB2, AT... ARABIDOPSIS POLY\(A\) BINDING ... Lus10027886
[exp]
8.5 0.9496
AT3G63400 Cyclophilin-like peptidyl-prol... Lus10018746
[exp]
9.1 0.9407
AT5G48760 Ribosomal protein L13 family p... Lus10032599
[exp]
9.2 0.9570
AT3G02760 Class II aaRS and biotin synth... Lus10030341
[exp]
9.8 0.9438

Lus10001487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.