Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22000 156 / 2e-50 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008487 [exp] 225 / 1e-77 AT4G22000 168 / 5e-55 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G015800 [exp] 194 / 2e-65 AT4G22000 151 / 3e-48 unknown protein Potri.015G012700 [exp] 193 / 4e-65 AT4G22000 147 / 6e-47 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001488 pacid=23157128 polypeptide=Lus10001488 locus=Lus10001488.g ID=Lus10001488.BGIv1.0 annot-version=v1.0 ATGGCGGGTAAATTAGCAAGGAATTTGACGCAGGCTGTTGCAGAGTACCAGTATCCATGGAAGGAGAAGTTGGCAAAGCACAAAGACGAACTATCCAAGG GCGTATGGGGCTATTGGAACTTAGGTGCATGGACGCCTCTGCACATCAGCGCCCGTCGAAGAGCTAAACTGCGCAGGGAAGTTCTTCTTGCTGGGCAAGA CTGGCCGTATGATCCGGCGAGGAAAGAAATGAAGACGAAAATGAAAGGACACAAATGCGACAGGATAGCTGCGGAGAAACGAGCAAACACTGTGAAGCTG ATGGAGAAAATGCCAGATATGTTGCTAGCATACAAGAAGAGAAGATGGGAGAAGAAGATGAAGGAAGAGGACAAGACTAAGTAG
AA sequence Show only first row Show all	>Lus10001488 pacid=23157128 polypeptide=Lus10001488 locus=Lus10001488.g ID=Lus10001488.BGIv1.0 annot-version=v1.0 MAGKLARNLTQAVAEYQYPWKEKLAKHKDELSKGVWGYWNLGAWTPLHISARRRAKLRREVLLAGQDWPYDPARKEMKTKMKGHKCDRIAAEKRANTVKL MEKMPDMLLAYKKRRWEKKMKEEDKTK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22000			unknown protein		Lus10001488 [exp]	0	1
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10043301 [exp]	2.6	0.8753
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10021679 [exp]	16.1	0.8175
					Lus10006006 [exp]	21.0	0.8703
AT3G47160			RING/U-box superfamily protein...		Lus10005859 [exp]	23.7	0.8568
AT2G24550			unknown protein		Lus10020142 [exp]	41.7	0.8501
AT3G07310			Protein of unknown function (D...		Lus10025896 [exp]	42.3	0.8523
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10011924 [exp]	47.9	0.8353
AT5G62980		FOLB2	Dihydroneopterin aldolase (.1)		Lus10021252 [exp]	53.3	0.8151
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10038265 [exp]	62.7	0.8332
AT3G47160			RING/U-box superfamily protein...		Lus10001209 [exp]	64.2	0.8359

Compare expression of checked genes

Lus10001488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.