Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63430 843 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G41180 716 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G45840 252 / 3e-74 Leucine-rich repeat protein kinase family protein (.1.2) AT4G18640 226 / 8e-65 MRH1 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) AT5G58540 204 / 5e-60 Protein kinase superfamily protein (.1.2.3) AT3G56050 194 / 2e-54 Protein kinase family protein (.1.2) AT1G75820 194 / 3e-52 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT2G40270 186 / 1e-51 Protein kinase family protein (.1.2) AT2G01210 189 / 3e-51 Leucine-rich repeat protein kinase family protein (.1) AT1G31420 184 / 2e-50 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008486 [exp] 1296 / 0 AT1G63430 878 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008310 [exp] 1050 / 0 AT1G63430 857 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008018 [exp] 1041 / 0 AT1G63430 846 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017439 [exp] 305 / 3e-94 AT5G45840 457 / 1e-152 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007516 [exp] 295 / 2e-90 AT5G45840 463 / 4e-155 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025400 [exp] 283 / 5e-86 AT5G45840 608 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10015277 [exp] 273 / 1e-82 AT5G45840 548 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031290 [exp] 238 / 3e-69 AT4G18640 457 / 7e-153 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Lus10031860 [exp] 233 / 2e-67 AT5G45840 491 / 4e-166 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124800 [exp] 947 / 0 AT1G63430 858 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G106600 [exp] 906 / 0 AT1G63430 839 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.011G067400 [exp] 311 / 4e-96 AT4G18640 678 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.004G058100 [exp] 302 / 1e-92 AT4G18640 694 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.008G072100 [exp] 293 / 4e-90 AT2G40270 451 / 2e-153 Protein kinase family protein (.1.2) Potri.009G075400 [exp] 249 / 3e-73 AT2G40270 449 / 9e-152 Protein kinase family protein (.1.2) Potri.001G280200 [exp] 237 / 2e-68 AT2G40270 430 / 2e-144 Protein kinase family protein (.1.2) Potri.010G185300 [exp] 214 / 1e-60 AT2G40270 434 / 1e-146 Protein kinase family protein (.1.2) Potri.003G105000 [exp] 196 / 2e-54 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.004G095700 [exp] 193 / 1e-52 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001489 pacid=23157123 polypeptide=Lus10001489 locus=Lus10001489.g ID=Lus10001489.BGIv1.0 annot-version=v1.0 ATGAGATCATACACTTCATTGCAGCTTCTGTTATTTGTTACTTCTCTAGCTCCCTTTGTCTCTTGTCAGTCTTTTCCTCAGGATGAAGTTTCAGCGCTGA ATGCATTCAAGGAAGCAATATATGAAGACCCTCTTCTGGTTTTGTCCAATTGGAATGCTGTAGATGCTAATCCTTGTGAGTGGTCTGGTGTTTATTGCTC TTCTGCTGGGGACCATGTTGTTAAGATAAACATATCTGAATCGTCTCTCCGAGGATTTATATCTCCTGATTTGAGCAGGATCACAAACTTGCAAGAACTA GTCTTGCATAGGAACAACTTGTTAGGAACCATACCAAAAGAACTAGGCATGCTGAAGCAGCTTAAGAGGCTGGATTTAGGAGCCAATCAATTGACCGGTC CGATTCCTCCTGAGCTGGCGAATATATCTGGCATCATGAAAATGAATTTCCAGTCAAATGGGCTAACTGGGAATCTGCCCTCTGGGTTTGGCGATTTGAA ATACCTTCAGGAACTTGTCCTGGATAGGAACAGACTCCAGGGTTTTTTTCCAGCTAGTAATGCTTTCCCTTCCACTGCGCATGGGATGTTCTCAGGTGGA AACTTAACTGGTCTGTGTCGAGCATCTAACTTAAAAGTAGCCGATTTCTCTTTCAACTTCTTTACCGGAACGATACCTAAATGTTTGGAATACCTTCCCA GGGCAAGCTTTCAAGGAAACTGCCTTCAGAACAAAGATCCTAAACAGCGAAGTTCTGCTCAATGTAGCAAGTACCCCGGTCCTCAACCAATGAAAAACCA TGAAACGTCTAACAACATAAGGCACCCAGCTGCAGAAGTAGTTTCTTCCAAGGAGCATCAGAGGAAGTCGAAACCGACGTGGTTATTGGTTTTGGAAATA GTGACGGGAATCATGGTTGCAGCCATCTTTGTTGTTTTCGTTTTCACCGCCTTCCAGAGGTGGAACACCAGGGCTGCTATCATAATGCCTTGGAAGAAAT CAAGCAGTCGGAAGGAGCCTTTGACTGTATACATAGCAGACACTGATATGCTGAAAGACGTGGCGAAATTCAACAGACAGGAACTGGAAACAGCGTGCGA AGACTTCAGCAACATCATTGGATCTTCACCGGATAGCTTGGTGTATAAGGGGATCATGAAAGGTGGTTCCGAGATTGCGGTCATATCTCTTTGCATCAAG GAGCAACTCTGGACTGGCTACCTTGAACTCTATTTCCAGAGGGAGGTTGCAGATTTGGCAAGATTAAACCATGAGAACACTGGGAAGTTCCTAGGATATT GTAAAGAGAGCAGTCCATTTACCAGAATGCTAGTTTTCGAATATGCATCGAATGGAACCTTGAATGAACACCTTCATTATGGAGAAGAAAACCAATTATC CTGGACACGGCGCATGAGGATTATTACAGGCATGGCTCGAGGGCTAAAGTACCTTCATGAGGAACTCGACCCGCCTTTCACAATCTCGGAGTTGAATTCT AGTGCTGTTTACCTAACAGAAGACTTCTCCCCCAAGCTGGTGGATTTCGAGAGCTGGAAGAGCATCGTGTCCAGATCAGAAAAGAATTATGCATCCATTG GAGGCCAAGGTGCTATCTGCGTACTTCCGAATTCAATGGAGGCGCGCCACCTTGACATTAAAGGAAATGTGTATGCTTTCGGTGTACTATTGCTCGAAAT CATCAGCGGTAGGCCTCCGTACTGCAAAGACAAAGGGCCCCTGGTAGACTGGGCTAAGGACTTACTCGAAAACCCGGACGCAATGTGCAATCTGGTGGAT CCTGAGCTGAAGAACTTCAAACTTGAGGACCTGAAAGCTGTATGTGAAGCTGTAACGCTAAGCATCCATCCAGATGCTACAAAGCGGCCATCGATGAAGG AGTTGTGCACGATGCTGGAAAGCCGAATCGACACATCGGTGTCTTATGACTTCAAGGCATCTTCATTGGCATGGGCTGAGCTTGCATTGTCATCACAATA A
AA sequence Show only first row Show all	>Lus10001489 pacid=23157123 polypeptide=Lus10001489 locus=Lus10001489.g ID=Lus10001489.BGIv1.0 annot-version=v1.0 MRSYTSLQLLLFVTSLAPFVSCQSFPQDEVSALNAFKEAIYEDPLLVLSNWNAVDANPCEWSGVYCSSAGDHVVKINISESSLRGFISPDLSRITNLQEL VLHRNNLLGTIPKELGMLKQLKRLDLGANQLTGPIPPELANISGIMKMNFQSNGLTGNLPSGFGDLKYLQELVLDRNRLQGFFPASNAFPSTAHGMFSGG NLTGLCRASNLKVADFSFNFFTGTIPKCLEYLPRASFQGNCLQNKDPKQRSSAQCSKYPGPQPMKNHETSNNIRHPAAEVVSSKEHQRKSKPTWLLVLEI VTGIMVAAIFVVFVFTAFQRWNTRAAIIMPWKKSSSRKEPLTVYIADTDMLKDVAKFNRQELETACEDFSNIIGSSPDSLVYKGIMKGGSEIAVISLCIK EQLWTGYLELYFQREVADLARLNHENTGKFLGYCKESSPFTRMLVFEYASNGTLNEHLHYGEENQLSWTRRMRIITGMARGLKYLHEELDPPFTISELNS SAVYLTEDFSPKLVDFESWKSIVSRSEKNYASIGGQGAICVLPNSMEARHLDIKGNVYAFGVLLLEIISGRPPYCKDKGPLVDWAKDLLENPDAMCNLVD PELKNFKLEDLKAVCEAVTLSIHPDATKRPSMKELCTMLESRIDTSVSYDFKASSLAWAELALSSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63430			Leucine-rich repeat protein ki...		Lus10001489 [exp]	0	1
AT1G06470			Nucleotide/sugar transporter f...		Lus10010954 [exp]	2.2	0.8850
AT3G26720			Glycosyl hydrolase family 38 p...		Lus10012578 [exp]	4.9	0.8750
AT5G20120			unknown protein		Lus10019426 [exp]	5.3	0.8620
AT1G79710			Major facilitator superfamily ...		Lus10024099 [exp]	13.7	0.8119
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10034151 [exp]	14.3	0.8386
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10016633 [exp]	14.8	0.8753
AT5G08335		ATICMTB, ATSTE1...	ARABIDOPSIS THALIANA ISOPRENYL...		Lus10030398 [exp]	21.0	0.8422
AT5G53340			Galactosyltransferase family p...		Lus10038830 [exp]	23.7	0.7970
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10024436 [exp]	27.5	0.8697
AT5G57830			Protein of unknown function, D...		Lus10022171 [exp]	28.6	0.8659

Compare expression of checked genes

Lus10001489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.