Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25320 2251 / 0 TRAF-like family protein (.1) AT2G25330 1021 / 0 TRAF-like family protein (.1) AT3G11910 92 / 2e-18 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT5G06600 88 / 5e-17 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G58210 83 / 1e-16 TRAF-like family protein (.1) AT5G26260 80 / 2e-15 TRAF-like family protein (.1) AT3G58290 79 / 2e-15 TRAF-like superfamily protein (.1.2.3) AT3G58340 77 / 2e-14 TRAF-like family protein (.1) AT3G58200 69 / 6e-12 TRAF-like family protein (.1) AT3G17380 69 / 6e-12 TRAF-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002926 [exp] 3002 / 0 AT2G25320 2345 / 0.0 TRAF-like family protein (.1) Lus10005821 [exp] 452 / 3e-146 AT2G25320 309 / 7e-96 TRAF-like family protein (.1) Lus10029309 [exp] 93 / 2e-18 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10008949 [exp] 91 / 1e-17 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034130 [exp] 90 / 2e-17 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10043456 [exp] 87 / 1e-16 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10025569 [exp] 74 / 4e-13 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10022207 [exp] 75 / 6e-13 AT1G04300 722 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Lus10019772 [exp] 74 / 9e-13 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G025600 [exp] 2600 / 0 AT2G25320 2378 / 0.0 TRAF-like family protein (.1) Potri.006G256400 [exp] 2597 / 0 AT2G25320 2377 / 0.0 TRAF-like family protein (.1) Potri.006G065300 [exp] 632 / 0 AT2G25320 610 / 0.0 TRAF-like family protein (.1) Potri.014G055400 [exp] 94 / 4e-20 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.003G103200 [exp] 92 / 1e-19 AT3G17380 251 / 2e-82 TRAF-like family protein (.1) Potri.008G012600 [exp] 94 / 7e-19 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 94 / 9e-19 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 93 / 1e-18 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G245100 [exp] 91 / 6e-18 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G099600 [exp] 79 / 2e-15 AT3G17380 344 / 1e-118 TRAF-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF00917 [flax] [poplar] MATH MATH domain
Representative CDS sequence Show only first row Show all	>Lus10001490 pacid=23177067 polypeptide=Lus10001490 locus=Lus10001490.g ID=Lus10001490.BGIv1.0 annot-version=v1.0 ATGTCGATTACCAGTCCTAAACCAGAAACAAGGCAACCACATATCACCCTGCGAAACCAACACACACAAATTCACCCGAGAGAGCTTCAGGGGAAAAAAA ACTACGAACCAGACGACGGAGCAATGAAGCACACTTCCTCCTCCGAAGCAGTCCCTTCATCGTCGTCATCTTCCACCTCTTCGTCTCTAATATTGTCTTC CGACCAGTTACCTCCCGTCACCGCCGCATCGTCTACAACCTCATCCTCCTCCTCCCGCTCCGCTGCCGCCGCCGCCTCATCATCGTCAATCCCTGTGGAG GACCTCGCCGTCAGCTCAACCAGGGACGGAAGCGGCGGGGCGGATGACCCCGTGGTGGTGGATCGTCGTGGTGAGTACTCCGCCGTTTGCAGATGGACAG TAGATAATTTTCCCCGGGTGAAAGCTAGGGCACTATGGAGCAAGTACTTCGAGGTCGGTGGGTATGATTGCCGGCTGTTAATTTACCCCAAGGGAGACTC GCAGGCGTTGCCTGGATACATCTCAATCTATCTCCAAATCATGGACCCTAGGGGAACCTCTTCCTCCAAATGGGACTGCTTTGCCAGCTACCGTCTGTCA ATCGCCAATGTCGCCGACGATTCCAAGACGATTCATCGGGATTCGTGGCACCGTTTCTCCAGCAAGAAGAAATCTCACGGGTGGTGCGATTTCACGCCTT CATCAACTGTTTTCGATCCCAAGCTGGGTTTCTTATTGAATAACAATTCCATTCTCGTCACTGCTGATATTCTTATCCTTAATGAATCGGTCAATTTCGT GCGTGATAACAACAATGACGTTCAGTATACCTCTTCATCTTCTTCCTCCGCTGCCTCTTCCTCGTCCTCCATCATTTCTTCCTCCGTGGTTGCTAGCCCA GTATCTGATGTCCTGAGTGGTAAGTTCACTTGGAAAGTGCATAATTTCAGTCTGTTTAAGGATATGATCAAGACGCAGAAGATCATGAGCCCTGTTTTCC CAGCTGGGGAGTGTAACCTCAGGATCAGTGTGTATCAGAGCACTGTGAATGGACATGATTATCTCTCCATGTGTTTGGAGAGTAAGGATACTGAGAAAGT TGTGGCGTCTGATAGAAGTTGTTGGTGTTTGTTTAGAATGTCTGTCTTGAATCAAAAGCCTGGTTCGAGTCACATGCACAGGGACTCCTATGGCCGGTTT GCTGCTGATAACAAAAGTGGTGACAACACCAGCTTGGGGTGGAATGATTTTATGAAAATGGTGGACTTCGTTGGAGTCGATTCTGGCTTTGTGTTGGATG ATACTGCAGTTTTCAGTACTTCATTCCATGTGATTAAGGAGTCCAGTAACTTCTCCAAGACTGGGGGTTTGATTGGTGGCAGGATTGGGAATGGTGCGAG GAAGTCTGACGGGCATATGGGTAAATTTGTTTGGAAGATTGAGCATTTCACAAGGTTAAAGGATCTTCTGAAGAAAAGGAAGATTACAGGCCTCTGCATC AAGAGTAGGAGGTTTCAGATTGGGAATAGAGATTGTCGTCTCATTGTTTACCCCCGAGGGCAGTCTCAGCCTCCTTGTCACCTGTCAGTGTTTCTTGAGG TTACAGATGCAAGAAATACTTCCAGTGACTGGAGTTGTTTTGTGAGCCATCGTTTATCAGTTGTCAACCAAAAGACGGAGGAGAAATCTGTCACCAAGGA ATCTCAGAACCGGTACTCCAAAGCTGCAAAAGATTGGGGCTGGCGTGAATTTGTGACACTTACTAGTCTCTTTGACCAAGACTCTGGATTCCTGCTTCAA GATACTGTAGTATTCTCTGCAGAAGTTCTCATTTTGAAAGAGACGTCAATAATGCAAGATTTTACAGACGTAGATACTGAGACTCCGAGTAGTGGTTCTC AAAATGATAAGGTTGAGAAAAGAAGTTCGTTTACATGGAAGGTAGAGAATTTCTTGTCCTTCAAAGACATAATGGAAACCCGGAAGATTTTTAGCAAGTT TTTCCAAGCAGGAGGATGTGAGCTTCGGATTGGTGTTTATGAGTCCTTTGACACAATATGCATATACTTGGAGAGTGATCAATCAGTTGTTAGTGATCCG GATAAGAACTTCTGGGTTAGGTACAGGATGGCTGTAGTGAATCAAAAGAACCCATCAAAGACTGTATGGAAGGAGTCTTCTATTTGTACGAAGACATGGA ACAATTCCGTTTTGCAATTTATGAAGGTTTCAGACATGCTGGAAGCAGATGCAGGTTTCCTTGTGCGCGACACCATCGTTTTTGTTTGTGAAATTTTGGA TTGCTGCCCTTGGTTCGAGTTTTCTGATTTGGAGGTTTGGGCTTCTGAGGACGACCAAGATGCTTTAACAACTGATCCTGATGAACTTGTTGATTCTGAA GATAGTGAGGGCATAAGCGGAGATGAAGAAGATATTTTTAGAAGTCTTCTCTCAAGGGCTGGGTTTCACCTCACATACGGAGACAACCATTCACAACCAC AGGTTACTTTAAGGGAAAAACTCCTGATGGATGCTGGTGCAATTGCCGGTTTTCTAACTGGATTACGGGTTTATCTTGACGACCCTGTTAAAGTGAAGCG GTTACTTCTTCCAACCAAGTTTTCTGGTGGAAATGATGGTAAAAAGGCCACAAACGTGGATGAAACTTCTCCCAGTTTGATGAATTTATTAATGGGAGTT AAAGTATTGCAGCAAGCCATCATAGATTTACTTTTAGACATTATGGTAGAATGCTGCCAGCCTTCGGAGGGAACTGGCAATGATAATCTCTTTGAGGTGA CCTCTAAACCTTCTCTTGATGACAGTGGTGCAGCCATCCCACTGGAATGTGACAGGGAAGGTGGGGCTGTGGGATCTGCCCAGTTTCCTAAATGTGAGAG ATTGGATTCTGGCTCTGATACTATCAGTGCATCTGCTATACAAAGCTCCGAGTCTAGTGGCATCGATGTGACAAGCAAGGCTACTCCAGGACATTCTATT TCCCCACCAATGACAACAGCAGGAAGTTCTATAGGAAGCGCTTCACTACGGGCCAAGGCTAAGTGGCCGGAGCAATCTGAGGAGCTATTGGGATTAATTG TAAATTCTTTAAGAGCACTAGATGGTGCTGTCCCTCAAGGCTGTCCTGAGCCACGAAGGAGGCCTCAGTCTGCCCAAAAGATTGCTCTAGTTTTGGATAA AGCTCCTAAACATTTAGAGCCAGATCTAGTTGCTTTAGTGCCAAAGCTGGTTGAGCATTCAGAACATCCTTTAGCAGCTTCTGTGCTCATTGAAAGACTC CAAAAGCCTGATGCAGAGCCTGCACTTCGCTTGCCTGTTTTTGGCGCTCTGACTCAACTGGAATGTGGCAGTGATGTGTGGGAACAAGTTCTATTGCAGT CTCTTGAACTTTTAGCTAATACAAACGATGAACCCCTTGCCGCAACTATAGATTTTATATTCAAAGCTGCATCCCAGTGCCAACATCTTCCCCAAGCAGT CAGATCTATTCGTTCTAGGCTGAAGTCTTTGGGACCCGAGGTTGCTCCTTGTGTTCTTGAACTTTTGAGTAGAACTGTAAATAGTTGGGGAGATGTGGCG GAAACTATACTTCGAGATATCAACTCCGATGATGACCTCTGTAGCGACGGCACACCATCATCTTGTCGGCTTTTCTTATTTGGTGAAAACGGGCATGCAG TAGATGGGCATGTTTTTCAGGCTACTTCCCATTTTTCTGATATTTACGTTCTCATCGAAATGCTCTCCATACCTTGCCTTGCTGTCGAAGCTTCTCGGAC ATTTGAGAAGGCTGTAGCTCGAGGAGCAATAGTTGCTCAGTCTGTGGCAATGGTTTTAGAGAGGCGCCTCGCTCAGAGGCTGAACTTCAATGCTCAATTT GCTGCCGAAATTTTCCGGCACCCTGATGTTGTATCTGTATCGGATGGAGAAGCCAGTAGTGAAAAGCTTCAAGTCCAGCGTGGTGACGATTTTAACGCCG TCCTTGGTCTTGCTGAGACGTTGGCCCTCTCAACCGATCTTCGTATAAAGGGGTTTGTGAAGATCCTATACACAATATTGTTCAAATGGTATGCAAGCGA GTCTTATAGGGCGCAAATGCTTAAACGGCTTGTTGATCGTGCTACCTGTACCTCGGACAGTAGCCGCAATGTAGATTTAGACTTGGACGTGTTGGTTATT TTAGTTTGTGAAGACCAAGAAATCGTCAAGCCTGTGCTCAGCTTGATGCGTGAAGTTGCAGAACTTGCGAATGTAGATCGAGCTACCCTTTGGCATCAAC TCTGTGCCAGCGAAGATGAAATCATCCGCTTGCGGGAAGATAGAAAGGCAGAGATTTCTATTATGGTGAAGGAGAAAACAGCGCTTTCGCAGAAATTAAG CGAGTCAGAGGCAACTTGCAGTAGACTCAAGTCTGAGATAAGGGCCGAGCTGGACCGTTTTGGGCGGGAGAAGAAAGAGCTCTCTGAACAAATACAAGAA GGTGAAAGTCAACTTGAGTGGCTCCGCTCCGAACGTGATGATGAACAAAGAAAGCTTACATCGGAGAAGAAAGTTCTTCAAGATCGTCTCCATGACGCCG AGTCACAACTCACCCAATTGAAGTCTCGCAAAAGGGATGAACTTAAGAGAATTGTGAAGGAGAAGAATGCTCTTACCGAAAGATTAAAGAGTGCTGAGGC TGCACGGAAAAGGTTCGACGAAGAACTGAAAAGATACGCCACTGAGAATGTGAGTCGGGAGGAAATCCGTCAGTCGTTGGAGGATGAAGTTCGGAGACTA ACGCAAACTGTTGGACAAACAGAAGGAGAAAAGAGGGAGAAAGAAGAGCAGGTTGCTAGGTGTGAGGCTTATATTGATGGAATGGAATCCAAATTGCAGG CTTGCCAGCAATATATCCACACGCTCGAGGCATCACTGCAAGAAGAAATGTCTCGACACGCCCCTCTGTACGGTGCCGGACTGGAAGCTCTGTCGATGAA GGAGCTCGATACTCTCTCACGCATCCACGAGGAAGGCCTCCGACAGATTCACGCTCTCCAACAACAACGCAAGGCCGGAAGCCCAGCCGGCAGCCCACAC ACTATACCCCACACTCATGGCTTATTCCCCACCGCCGCTGCTCCGCCTCCAATGGTCGTCGGGCTGCCTCCTTCGCTCATCCCTAACGGGGGTGGTGGCG GGCTCCACCACCACGGGAATGGCGGAGTCGGACAATGGTTTAACCACAGCTGA
AA sequence Show only first row Show all	>Lus10001490 pacid=23177067 polypeptide=Lus10001490 locus=Lus10001490.g ID=Lus10001490.BGIv1.0 annot-version=v1.0 MSITSPKPETRQPHITLRNQHTQIHPRELQGKKNYEPDDGAMKHTSSSEAVPSSSSSSTSSSLILSSDQLPPVTAASSTTSSSSSRSAAAAASSSSIPVE DLAVSSTRDGSGGADDPVVVDRRGEYSAVCRWTVDNFPRVKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLS IANVADDSKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDPKLGFLLNNNSILVTADILILNESVNFVRDNNNDVQYTSSSSSSAASSSSSIISSSVVASP VSDVLSGKFTWKVHNFSLFKDMIKTQKIMSPVFPAGECNLRISVYQSTVNGHDYLSMCLESKDTEKVVASDRSCWCLFRMSVLNQKPGSSHMHRDSYGRF AADNKSGDNTSLGWNDFMKMVDFVGVDSGFVLDDTAVFSTSFHVIKESSNFSKTGGLIGGRIGNGARKSDGHMGKFVWKIEHFTRLKDLLKKRKITGLCI KSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDARNTSSDWSCFVSHRLSVVNQKTEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLLQ DTVVFSAEVLILKETSIMQDFTDVDTETPSSGSQNDKVEKRSSFTWKVENFLSFKDIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVVSDP DKNFWVRYRMAVVNQKNPSKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTIVFVCEILDCCPWFEFSDLEVWASEDDQDALTTDPDELVDSE DSEGISGDEEDIFRSLLSRAGFHLTYGDNHSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPVKVKRLLLPTKFSGGNDGKKATNVDETSPSLMNLLMGV KVLQQAIIDLLLDIMVECCQPSEGTGNDNLFEVTSKPSLDDSGAAIPLECDREGGAVGSAQFPKCERLDSGSDTISASAIQSSESSGIDVTSKATPGHSI SPPMTTAGSSIGSASLRAKAKWPEQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKIALVLDKAPKHLEPDLVALVPKLVEHSEHPLAASVLIERL QKPDAEPALRLPVFGALTQLECGSDVWEQVLLQSLELLANTNDEPLAATIDFIFKAASQCQHLPQAVRSIRSRLKSLGPEVAPCVLELLSRTVNSWGDVA ETILRDINSDDDLCSDGTPSSCRLFLFGENGHAVDGHVFQATSHFSDIYVLIEMLSIPCLAVEASRTFEKAVARGAIVAQSVAMVLERRLAQRLNFNAQF AAEIFRHPDVVSVSDGEASSEKLQVQRGDDFNAVLGLAETLALSTDLRIKGFVKILYTILFKWYASESYRAQMLKRLVDRATCTSDSSRNVDLDLDVLVI LVCEDQEIVKPVLSLMREVAELANVDRATLWHQLCASEDEIIRLREDRKAEISIMVKEKTALSQKLSESEATCSRLKSEIRAELDRFGREKKELSEQIQE GESQLEWLRSERDDEQRKLTSEKKVLQDRLHDAESQLTQLKSRKRDELKRIVKEKNALTERLKSAEAARKRFDEELKRYATENVSREEIRQSLEDEVRRL TQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLEALSMKELDTLSRIHEEGLRQIHALQQQRKAGSPAGSPH TIPHTHGLFPTAAAPPPMVVGLPPSLIPNGGGGGLHHHGNGGVGQWFNHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25320			TRAF-like family protein (.1)		Lus10001490 [exp]	0	1
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10007932 [exp]	2.2	0.9328
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Lus10005982 [exp]	2.4	0.9370
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013468 [exp]	2.8	0.9218
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10012331 [exp]	3.0	0.9160
AT5G22760			PHD finger family protein (.1)		Lus10009383 [exp]	3.0	0.9434
AT4G32620			Enhancer of polycomb-like tran...		Lus10041252 [exp]	3.5	0.9391
AT3G14810		MSL5	mechanosensitive channel of sm...		Lus10005555 [exp]	4.7	0.9100
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Lus10035533 [exp]	6.0	0.9079
AT5G22760			PHD finger family protein (.1)		Lus10020532 [exp]	7.5	0.9359
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10033598 [exp]	8.5	0.9051

Compare expression of checked genes

Lus10001490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.