Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09270 150 / 2e-45 ATGSTU8 glutathione S-transferase TAU 8 (.1) AT2G29480 141 / 9e-42 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT2G29420 140 / 2e-41 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) AT2G29460 140 / 2e-41 GST22, ATGSTU4 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) AT2G29490 139 / 1e-40 GST19, ATGSTU1 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) AT2G29450 137 / 5e-40 ATGSTU1, AT103-1A, ATGSTU5 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, glutathione S-transferase tau 5 (.1) AT1G74590 135 / 2e-39 ATGSTU10 glutathione S-transferase TAU 10 (.1) AT1G10370 131 / 8e-38 GST30B, ATGSTU17, ERD9 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) AT5G62480 131 / 9e-38 GST14B, ATGSTU9 GLUTATHIONE S-TRANSFERASE 14B, GLUTATHIONE S-TRANSFERASE 14, glutathione S-transferase tau 9 (.1.2) AT2G29440 130 / 2e-37 GST24, ATGSTU6 GLUTATHIONE S-TRANSFERASE 24, glutathione S-transferase tau 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041654 [exp] 290 / 3e-100 AT2G29420 175 / 1e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10007897 [exp] 236 / 1e-78 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040764 [exp] 175 / 1e-54 AT2G29420 229 / 6e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016471 [exp] 171 / 5e-53 AT2G29420 234 / 8e-78 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016469 [exp] 159 / 9e-49 AT2G29420 230 / 2e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040761 [exp] 151 / 2e-45 AT2G29420 233 / 1e-77 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10021103 [exp] 147 / 4e-44 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1) Lus10035241 [exp] 146 / 1e-43 AT2G29420 188 / 5e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10007896 [exp] 145 / 3e-43 AT2G29490 171 / 2e-53 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G072400 [exp] 227 / 3e-75 AT3G09270 161 / 2e-49 glutathione S-transferase TAU 8 (.1) Potri.016G023200 [exp] 216 / 7e-71 AT3G09270 189 / 1e-60 glutathione S-transferase TAU 8 (.1) Potri.016G023340 [exp] 214 / 3e-70 AT2G29420 194 / 3e-62 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.006G024200 [exp] 204 / 3e-66 AT2G29420 188 / 4e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G070900 [exp] 181 / 4e-57 AT2G29420 221 / 9e-73 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.002G254000 [exp] 176 / 4e-55 AT2G29420 167 / 1e-51 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.015G042000 [exp] 175 / 4e-55 AT2G29460 197 / 7e-64 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) Potri.012G052200 [exp] 174 / 2e-54 AT2G29420 220 / 2e-72 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061200 [exp] 172 / 4e-54 AT3G09270 202 / 8e-66 glutathione S-transferase TAU 8 (.1) Potri.008G175100 [exp] 162 / 8e-50 AT2G29420 169 / 1e-52 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001491 pacid=23177064 polypeptide=Lus10001491 locus=Lus10001491.g ID=Lus10001491.BGIv1.0 annot-version=v1.0 ATGGAAGATGAAGTGAAGCTGCTGAAGACATGGTCAAGCCTGTTCGGACTGAGGGTGGTTTGGGCGCTGAAGCTCAAAGGAATACCTTACGAGTCGTTTG ATGAAGATCTCAGCAGCAAGAGCGATGAGCTTCTGAGTCTCAACCCAGTCCACAAGAAAGTCCCTGTTCTTATCCACAGAGGAAGATCCATCTCTGAATC GCTTGTGATTCTTGAATACATCGAAGAGACCTGGAAGCAGAATCCGCCTGCACTTCTGCCTCAGGATCCGCTTCAGAGGGCCGCCGCCCGGTTCTGGGCC AAGTTTGGAGATGAAAAGGCGCTCCCAACAATGTGGAAGGCACTGACAACAGAGGGGGAAGAGCAAGAGCAAGCACTTGCGGAAACATCAGAGAACCTCA AGCTGCTGGAACAAGAGTTGAAGGGCAAGAAGTTCTTCCGTGACGAAGAGATTGGAATTGCGGACATTGCTCTGGGTTGGGTGGTCAACTTGCTCCCTGT CTACCAAGAGATTCTGGGTTTGAAGCTCCTAAACGAGGAACATCATCCATCCTTGCTGGAATGGATGCAGAGGATTTCGGATGTTCCCGTCATCAGAGAG AGCTGGCCTCCTCGCGACAGGCTCGTCACGAAATGGACCGACATTCGCCACCGATTCCTCCTGGCAGCATGA
AA sequence Show only first row Show all	>Lus10001491 pacid=23177064 polypeptide=Lus10001491 locus=Lus10001491.g ID=Lus10001491.BGIv1.0 annot-version=v1.0 MEDEVKLLKTWSSLFGLRVVWALKLKGIPYESFDEDLSSKSDELLSLNPVHKKVPVLIHRGRSISESLVILEYIEETWKQNPPALLPQDPLQRAAARFWA KFGDEKALPTMWKALTTEGEEQEQALAETSENLKLLEQELKGKKFFRDEEIGIADIALGWVVNLLPVYQEILGLKLLNEEHHPSLLEWMQRISDVPVIRE SWPPRDRLVTKWTDIRHRFLLAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	0	1
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10029949 [exp]	1.7	0.9637
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10004870 [exp]	2.2	0.9667
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Lus10014083 [exp]	3.2	0.9642
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005158 [exp]	3.9	0.9581
AT3G48990			AMP-dependent synthetase and l...		Lus10027477 [exp]	5.3	0.9447
AT3G52105			unknown protein		Lus10016415 [exp]	5.7	0.9426
AT4G39230			NmrA-like negative transcripti...		Lus10042311 [exp]	5.7	0.9551
AT4G35160			O-methyltransferase family pro...		Lus10015311 [exp]	5.7	0.9613
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Lus10006617 [exp]	6.7	0.9509
AT5G45230			Disease resistance protein (TI...		Lus10012247 [exp]	7.5	0.9514

Compare expression of checked genes

Lus10001491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.