Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11150 342 / 2e-120 ATVAMP713 vesicle-associated membrane protein 713 (.1) AT4G32150 340 / 8e-120 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1) AT2G25340 338 / 6e-119 ATVAMP712 vesicle-associated membrane protein 712 (.1) AT5G22360 241 / 9e-81 ATVAMP714 vesicle-associated membrane protein 714 (.1) AT1G04760 120 / 2e-33 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT2G33120 119 / 4e-33 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT1G04750 119 / 7e-33 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT3G54300 117 / 7e-32 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT2G32670 116 / 4e-31 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT4G15780 106 / 4e-28 ATVAMP724 vesicle-associated membrane protein 724 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041035 [exp] 351 / 2e-124 AT5G11150 343 / 9e-122 vesicle-associated membrane protein 713 (.1) Lus10006192 [exp] 353 / 2e-123 AT5G11150 345 / 9e-121 vesicle-associated membrane protein 713 (.1) Lus10043394 [exp] 246 / 2e-82 AT5G22360 400 / 6e-144 vesicle-associated membrane protein 714 (.1) Lus10034189 [exp] 246 / 2e-82 AT5G22360 400 / 6e-144 vesicle-associated membrane protein 714 (.1) Lus10002926 [exp] 226 / 1e-67 AT2G25320 2345 / 0.0 TRAF-like family protein (.1) Lus10011870 [exp] 122 / 5e-34 AT1G04760 376 / 3e-134 vesicle-associated membrane protein 726 (.1) Lus10022804 [exp] 121 / 1e-33 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 119 / 5e-33 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10038166 [exp] 119 / 6e-33 AT1G04760 383 / 3e-137 vesicle-associated membrane protein 726 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G025800 [exp] 365 / 8e-130 AT4G32150 366 / 2e-130 vesicle-associated membrane protein 711 (.1) Potri.006G256200 [exp] 353 / 7e-125 AT4G32150 352 / 5e-125 vesicle-associated membrane protein 711 (.1) Potri.018G125900 [exp] 265 / 4e-90 AT4G32150 276 / 1e-94 vesicle-associated membrane protein 711 (.1) Potri.001G219200 [exp] 245 / 3e-82 AT5G22360 369 / 1e-131 vesicle-associated membrane protein 714 (.1) Potri.009G018900 [exp] 244 / 7e-82 AT5G22360 367 / 6e-131 vesicle-associated membrane protein 714 (.1) Potri.012G119600 [exp] 129 / 1e-36 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.015G118300 [exp] 122 / 4e-34 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.003G177700 [exp] 121 / 9e-34 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.008G019400 [exp] 117 / 5e-32 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.002G240900 [exp] 115 / 1e-31 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin
Representative CDS sequence Show only first row Show all	>Lus10001492 pacid=23177072 polypeptide=Lus10001492 locus=Lus10001492.g ID=Lus10001492.BGIv1.0 annot-version=v1.0 ATGGCGATTCTTTACGCCCTCGTTGCTGCGAGGGGATCGGTCGTCTTGGCGGAGTTTAGCGCGACGGCGACTAACGCCAGCGCCATAGCCAAGCAGATTC TAGGCAAGATCCCCGGAAACGACGATAGCCACGTCTCTTACTCTCAAGGTCGGTTCATCTTCCACGTCAAGCGCACCGATGGCCTCACCGTCCTCTGTAT GGCCGACGAGACCGCCGGAAGTAAGCGTCTCGCCGATTCAAATTCTATTGAGGTCTCTTGTTTTGGAGCGAATTCTGTTGCAAGGAGAGTTCCGTTTGCG TTTCTGGAGGATATTCATCAGAGATTTGTGAGGACGTACGGCCGTGCTGTTCATTCAGCTCAAGCTTATGGTATGAATGATGAGTTTTCAAGGGTTTTGA GCCAACAAATGGAGTATTACTCCAATGATCCGAACGCAGATAGGATGAATAGACTCAAAGGTGAAATGAATCAGGTGCGAAATGTCATGATCGAGAACAT CGACAAAGTTCTCGAGAGGGGTGATCGCTTGGAACTGCTGGTGGATAAAACAGCCAATATGCAAGGGAACACCTTCCGTTTCAGAAAGCAAGCTCGCCGG TTCAGAAACACAGCCTGGTGGAGAAATGTCAAGCTCATGGTTGCTCTGATAGTCCTTATCCTAGCGGTCATATACGGCGTACTGGCTTTCGTCTGCCATG GACTAACACTCCCCAGATGCTTATAG
AA sequence Show only first row Show all	>Lus10001492 pacid=23177072 polypeptide=Lus10001492 locus=Lus10001492.g ID=Lus10001492.BGIv1.0 annot-version=v1.0 MAILYALVAARGSVVLAEFSATATNASAIAKQILGKIPGNDDSHVSYSQGRFIFHVKRTDGLTVLCMADETAGSKRLADSNSIEVSCFGANSVARRVPFA FLEDIHQRFVRTYGRAVHSAQAYGMNDEFSRVLSQQMEYYSNDPNADRMNRLKGEMNQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARR FRNTAWWRNVKLMVALIVLILAVIYGVLAFVCHGLTLPRCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11150		ATVAMP713	vesicle-associated membrane pr...		Lus10001492 [exp]	0	1
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022494 [exp]	3.3	0.8686
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Lus10041766 [exp]	4.7	0.8597
AT5G10780			unknown protein		Lus10023585 [exp]	5.1	0.8232
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10025565 [exp]	6.3	0.8444
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042859 [exp]	7.5	0.8225
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10000928 [exp]	7.5	0.8578
AT5G53280		PDV1	plastid division1 (.1)		Lus10039325 [exp]	7.6	0.7871
AT4G18230			unknown protein		Lus10032224 [exp]	9.0	0.8096
AT5G52990			SNARE-like superfamily protein...		Lus10022397 [exp]	13.4	0.8028
AT2G03120		ATSPP	signal peptide peptidase (.1)		Lus10037594 [exp]	16.1	0.7650

Compare expression of checked genes

Lus10001492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.