Plant FIBer expression Database

Lus10001494 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017320
[exp]
598 / 0 AT5G58340 76 / 8e-14 myb-like HTH transcriptional regulator family protein (.1.2)
Lus10002926
[exp]
435 / 8e-135 AT2G25320 2345 / 0.0 TRAF-like family protein (.1)
Lus10003404
[exp]
316 / 1e-104 ND /
Lus10042209
[exp]
112 / 3e-26 AT1G15720 70 / 1e-12 TRF-like 5 (.1)
Lus10017319
[exp]
180 / 4e-20 AT5G58340 66 / 2e-11 myb-like HTH transcriptional regulator family protein (.1.2)
Lus10024200
[exp]
72 / 5e-13 AT1G15720 65 / 5e-11 TRF-like 5 (.1)
Lus10009912
[exp]
72 / 6e-13 AT1G15720 64 / 1e-10 TRF-like 5 (.1)
Lus10008606
[exp]
61 / 1e-09 AT5G59320 84 / 3e-19 lipid transfer protein 3 (.1)
Lus10020771
[exp]
47 / 4e-05 AT5G58340 70 / 1e-12 myb-like HTH transcriptional regulator family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G154500
[exp]
59 / 6e-09 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10001494 pacid=23177060 polypeptide=Lus10001494 locus=Lus10001494.g ID=Lus10001494.BGIv1.0 annot-version=v1.0
ATGGGTTATGAATTTCGTTCGCCTCAAACCAAATCCAGCTTCCATCATCAAAAAGTCGTTGCCACTCTCAACTCCTCGTTATCCGAATTCGCCAACCGTC
GCTCGAACAAGGTTAGGATTCTCGAGCTAATTCGGTCACTAATCGCCGGTGGGTCGGTCTCCGAGACTATACTCGAGTCACTGGAAGCAATAGAGCAGAT
AGACCGGGAGAACCGCGAAGAAACCCCGATGTCTGAAAAGATGAAAGCTGCAGCCGCCTATTGTGCGGTGGCAGTGGAGTGTACGGTGGCGGACGGAGAC
GTCAAGGTCGAGCTCACGGACCGGATATGGAGATGTAGAGTTCTCAAGTTGGAGATATCCAGAAAGAGCCAATTGGTTACGGATGTGCTAACGAGTTTTA
GGAATGCAGCCGAGTGTGCTCTCTGGGTTGCTCAGGATTTTGTCAGGTTTAGGGAAGTGGCGACCGAGATTGATGCCGCGGATTACGTTCGGTCTTACTT
AGCTGAGGCCATGGCGGCGGTGATACGAGATGCTTCTTCTTCAAGTGGGCAGGATCCTCTTCCTGGATCACTGCCTGTTGGAATCCCAAGTACATCTCTG
GTATCTAGACCCCCTGAAGTTCAGCAAGCATGTCTAGATACACTAAGATCATGTGTCGCCAAGTTACAAGCAGCTGTGAATGATCCTCTTCCCAATGCTC
GGCAGGTCTTTGAGTCGTTGAGTGCTGAAGCACCATCCAACGTGGAGAGACCAGTTGGAAACCGGGACAAGGCAAATGTGGATGTTCTTCACTTATCTTC
TAATGGTAGTGTGCCCGAACCCTCCGCTCAGCAGGGTCGTCAATGCCTTCAGACTGGCCAGAGCAGTAAAGCAGCAGCGCCAGTGAGGCATCAAAATCTT
GCGAACCTCGGCTTCATAACAAGGGGACTTGTTGCTCACCCATCTGCTGATGCTAGTATCCCTGACATCCCAGCTGTAAAGGATAAGAGGAAAGAAGTAA
TCATCAGCGATGGACTCGAACCCTCCGGTCAGCTGGATGATGAATGCTTTCAGATTGACCAGAGCAACAAGGCAGCAGCTAGTTCGTCGGCGAGGGATCA
AGTTGTTTCGAAATCCGGTTTGATGACAAGGAAAAACACTGCTGGCAGCACACATGATTCATTGACTGCTGAAGCTGTTTCGAAATCCGGTTGGATGACA
AGGAAAAACACTGCTGGCAGCACACGTGATTCATCGACTGCTGAAGCACCACAAAACGTTTCTCACCCAGCTAGAGTGCTTGACATCCCAGCTGAAGTAG
ATAGACCTGAACCTTCCTTGTTCAGCAATGAACTTGAACCCTCCGGTCAGCTGGATGATGAATGCTTTCAGATTGACCAGAGCAACAAGGCAGCAGCTAG
TTGGTCGACTGCTGGCAGCACACATGATTCATCGACTGCTGAAGCACCACAAAACATTTATCACCCAGCTAGTGTGCTTGGCATCCCAGCTGAAGTAGAT
AGACCTGAACCTTCCTCCTCTCAGAAGGATCGCCATGAGAGCCAGCAGGCCGATCAAAACAAGAAGGCAGTTGGTGAGTCATCCAGGCATCCAAAGAACT
CGAAAGACAGTCGCCATGCCTCCTCCATTAGTGAAGAAGCCGAGGAGAAAAGTAAATCCATGGTCCCGTGCGGAGGTGGAAGCCCTGGAAGATGGCGTGA
GAGAATCAAAATGAACGGACCGGTTTTCAATCCGTCAGACAGCCCCGACGGAACACCTGACCATCCGGTTTGTTTGGCGGACAGACCGGCGTTCCGTCCG
GTCAGACCATCCGGACGGAAATCGATTCTGTCTGGGCTGTCTGACTAG
AA sequence
>Lus10001494 pacid=23177060 polypeptide=Lus10001494 locus=Lus10001494.g ID=Lus10001494.BGIv1.0 annot-version=v1.0
MGYEFRSPQTKSSFHHQKVVATLNSSLSEFANRRSNKVRILELIRSLIAGGSVSETILESLEAIEQIDRENREETPMSEKMKAAAAYCAVAVECTVADGD
VKVELTDRIWRCRVLKLEISRKSQLVTDVLTSFRNAAECALWVAQDFVRFREVATEIDAADYVRSYLAEAMAAVIRDASSSSGQDPLPGSLPVGIPSTSL
VSRPPEVQQACLDTLRSCVAKLQAAVNDPLPNARQVFESLSAEAPSNVERPVGNRDKANVDVLHLSSNGSVPEPSAQQGRQCLQTGQSSKAAAPVRHQNL
ANLGFITRGLVAHPSADASIPDIPAVKDKRKEVIISDGLEPSGQLDDECFQIDQSNKAAASSSARDQVVSKSGLMTRKNTAGSTHDSLTAEAVSKSGWMT
RKNTAGSTRDSSTAEAPQNVSHPARVLDIPAEVDRPEPSLFSNELEPSGQLDDECFQIDQSNKAAASWSTAGSTHDSSTAEAPQNIYHPASVLGIPAEVD
RPEPSSSQKDRHESQQADQNKKAVGESSRHPKNSKDSRHASSISEEAEEKSKSMVPCGGGSPGRWRERIKMNGPVFNPSDSPDGTPDHPVCLADRPAFRP
VRPSGRKSILSGLSD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10001494
[exp]
0 1
AT5G03250 Phototropic-responsive NPH3 fa... Lus10040409
[exp]
2.0 0.8251
AT4G28600 NPGR2 no pollen germination related ... Lus10023748
[exp]
3.3 0.8302
AT1G53025 Ubiquitin-conjugating enzyme f... Lus10028151
[exp]
8.9 0.7820
AT3G27730 MER3, RCK ROCK-N-ROLLERS, ATP binding;AT... Lus10014551
[exp]
9.0 0.7980
AT1G50920 Nucleolar GTP-binding protein ... Lus10039110
[exp]
11.5 0.7506
AT4G25440 C3HZnF ZFWD1 zinc finger WD40 repeat protei... Lus10021656
[exp]
14.1 0.7613
AT3G10530 Transducin/WD40 repeat-like su... Lus10024656
[exp]
21.6 0.7480
AT1G01580 FRD1, ATFRO2, F... FERRIC CHELATE REDUCTASE DEFEC... Lus10027507
[exp]
22.2 0.7538
AT4G18530 Protein of unknown function (D... Lus10002991
[exp]
22.8 0.7497
AT5G44180 HD Homeodomain-like transcription... Lus10018634
[exp]
24.4 0.7821

Lus10001494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.