Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32160 307 / 1e-100 Phox (PX) domain-containing protein (.1) AT2G25350 296 / 4e-97 Phox (PX) domain-containing protein (.1) AT3G15920 256 / 1e-80 Phox (PX) domain-containing protein (.1) AT5G07120 41 / 0.0004 SNX2b sorting nexin 2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002925 [exp] 393 / 2e-134 AT4G32160 709 / 0.0 Phox (PX) domain-containing protein (.1) Lus10023125 [exp] 189 / 1e-55 AT3G15920 365 / 2e-115 Phox (PX) domain-containing protein (.1) Lus10026403 [exp] 42 / 0.0004 AT5G07120 753 / 0.0 sorting nexin 2B (.1) Lus10042247 [exp] 41 / 0.0004 AT5G07120 811 / 0.0 sorting nexin 2B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G026000 [exp] 319 / 2e-105 AT4G32160 736 / 0.0 Phox (PX) domain-containing protein (.1) Potri.006G256000 [exp] 315 / 6e-104 AT4G32160 758 / 0.0 Phox (PX) domain-containing protein (.1) Potri.001G201900 [exp] 270 / 4e-86 AT3G15920 590 / 0.0 Phox (PX) domain-containing protein (.1) Potri.019G124200 [exp] 42 / 0.0002 AT5G07120 778 / 0.0 sorting nexin 2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00787 [flax] [poplar] PX PX domain
Representative CDS sequence Show only first row Show all	>Lus10001495 pacid=23177074 polypeptide=Lus10001495 locus=Lus10001495.g ID=Lus10001495.BGIv1.0 annot-version=v1.0 ATGCAGGGACGGAGTCCACCGAAGCACAGACACGATGGGACTTCGCCCTTGCCGTTGGGGATGGACTGGAGTCCTCCTCCTCGAAAATGGAACGGACGGG ACACAGCTTGGCCACATGATCATAGAACAGGGTGGAGTTACTGTGTTACTATTCCTTCCTGGGCTGTCCTTGCGAAGTCAAGAGATTCAGATCCTGTCGT GGGGCAGTTTTACAGGGTTCAGGTTGGTCTGCAATCACCTGAGGGGTTCACAACTACATGTGGAGTATTGAGAAGATTTAACGATTTTCTGAGGTTATTT GCAGATCTTAAGAAGGCATTTCCAAAAAAAAGTCTTCCACCAGCTCCACCCAAGGGACTATTGCGGATGAAAACAAGAGCATTGTTGGAAGAGAGGAGGT GTTCTTTGGAGGAGTGGTTGACGAAGCTATTATCTGACATTGATATATCTAGAAGCATGGCTGTGGCATCGTTTCTTGAACTTGAAGTGGCTGCGAGATC TTCCTTTCAGGATACAAATCAGGAGTCTTCGGAATCGGCTTTAGCTGGTGATGCTACCACTCTTTCCTCTCAGATACCTTTAAATTCGAGCTCATCTGGT CTCACTGCTACTTCATCAGTTGCTTCCGATTATGGCAGGGGTACTCCTTATGAAGCATATTTGATTGGGAAAACCAGCATCTGA
AA sequence Show only first row Show all	>Lus10001495 pacid=23177074 polypeptide=Lus10001495 locus=Lus10001495.g ID=Lus10001495.BGIv1.0 annot-version=v1.0 MQGRSPPKHRHDGTSPLPLGMDWSPPPRKWNGRDTAWPHDHRTGWSYCVTIPSWAVLAKSRDSDPVVGQFYRVQVGLQSPEGFTTTCGVLRRFNDFLRLF ADLKKAFPKKSLPPAPPKGLLRMKTRALLEERRCSLEEWLTKLLSDIDISRSMAVASFLELEVAARSSFQDTNQESSESALAGDATTLSSQIPLNSSSSG LTATSSVASDYGRGTPYEAYLIGKTSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32160			Phox (PX) domain-containing pr...		Lus10001495 [exp]	0	1
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10037346 [exp]	4.0	0.8684
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10001717 [exp]	5.9	0.8776
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10014045 [exp]	11.7	0.8474
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10011907 [exp]	12.2	0.8442
AT5G36930			Disease resistance protein (TI...		Lus10011741 [exp]	12.6	0.8613
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	16.0	0.8335
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	16.7	0.8269
AT5G13560			unknown protein		Lus10023462 [exp]	18.0	0.8052
AT5G61140			U5 small nuclear ribonucleopro...		Lus10040524 [exp]	20.1	0.8467
AT2G03140			alpha/beta-Hydrolases superfam...		Lus10034894 [exp]	20.8	0.8089

Compare expression of checked genes

Lus10001495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.