Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32160 251 / 2e-76 Phox (PX) domain-containing protein (.1) AT2G25350 219 / 5e-65 Phox (PX) domain-containing protein (.1) AT3G15920 180 / 8e-50 Phox (PX) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002925 [exp] 667 / 0 AT4G32160 709 / 0.0 Phox (PX) domain-containing protein (.1) Lus10023125 [exp] 140 / 4e-36 AT3G15920 365 / 2e-115 Phox (PX) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G256000 [exp] 405 / 1e-135 AT4G32160 758 / 0.0 Phox (PX) domain-containing protein (.1) Potri.018G026000 [exp] 405 / 1e-135 AT4G32160 736 / 0.0 Phox (PX) domain-containing protein (.1) Potri.001G201900 [exp] 224 / 4e-66 AT3G15920 590 / 0.0 Phox (PX) domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001496 pacid=23177071 polypeptide=Lus10001496 locus=Lus10001496.g ID=Lus10001496.BGIv1.0 annot-version=v1.0 ATGGGGCAGACTATTATGGAGCAGCTTGAAGGCATTCCTAGGCATAAATCTCACACCAGAAACGCAAACAGTTTGACACGGAACTCCATGTACAATGGTA ATGCTTCTAAAGTTGTTTCTCTCTCCGGAAATGGAATGGAATTTTTCTCTGAGCCTGAGCATGGTATGGGACCTGGTCATGCTCGGAAATTGTCTAGTGA GAGTGTTGGAAGTGATGGAAGTTCTTTGAGAGGCAGCGAAAATATCGGTGTATCAAATTCAATTGCTGATGCATCTCCTGACCGTCCAAGAGGTGCCGAG GTTTCCAGCTCTACCCACATAGTTCTTCCGTTGGATCAGCGTCACAAAATGACAAGAGTCCTCTCGACGATGCAAAGAAGACTAGTCACTGCAAAAACGG ACATGGAGGACCTTATTTCTCGACTAACTCAAGAAAGAGCTACTAAAGATTATCTCACTAGGAAGGTAAAGGATCTGGAGGTGGAACTCGAGACCTCCAA ACAGAAAAATAAGGAAAACCTGCAGCAAGCTATTTTGATTGAGAGAGAGAGGTTAACACAGATGCAATGGGATATGGAGGAACTCAGGCGGAAAGTACTT GAATCGGAGCTGAAACTAAAGTCTAAAGAGGATGAAAAGTCAAGCATCAATTCAGATGATAGACCTTCGAATCAGGAAATGCCTATGGCACAGCAAGAGC TAGATGTTACTAGAAAGAAGCTTGAGGACCTGACAAGAAAATATAAAGCATTGGAAGCAAAATCAAAAGCAGAGATAAAGTTTCTTGCAAAGGAGTTCAA AGCTTTACAAAGTTCCCAGACGGCGCTGAAGGAGCAGCACGAGCGAACCACGAGGGAGAAATCTGAAATCGAGAAACATCTCGAACAGGAGAGAACGATT AGGGAACACCTTCAAGATCAGCAGAAACGACTTGTACACGATTGCAGGACCCTGTGGAGCCAACTTCAGGAATGCAACCTTAGTCTATCCAAGGTAGACG ACGCAGACGATTTCGTGCTGAACTCCTCGTTGGACGGCGCTCTCGATTTGTTGGAAACGTTTGATGACAGGATTAGCCTTATTCTTGCAGAGGCACAGTT GTTAGCTGCAGAGGACGAGAAGTCATTGAATTGCGAAGAATTGAGAATATTTCTGGCAGAAATAGTAGCCGATAATGCTAAGCTGAGGAAACAAGTGAAT TCTGCTACTCGTCGAGCTCTCCGGAAAGGCACGATAACACGGGGCAATGGTGAGTCGTCAAATTAA
AA sequence Show only first row Show all	>Lus10001496 pacid=23177071 polypeptide=Lus10001496 locus=Lus10001496.g ID=Lus10001496.BGIv1.0 annot-version=v1.0 MGQTIMEQLEGIPRHKSHTRNANSLTRNSMYNGNASKVVSLSGNGMEFFSEPEHGMGPGHARKLSSESVGSDGSSLRGSENIGVSNSIADASPDRPRGAE VSSSTHIVLPLDQRHKMTRVLSTMQRRLVTAKTDMEDLISRLTQERATKDYLTRKVKDLEVELETSKQKNKENLQQAILIERERLTQMQWDMEELRRKVL ESELKLKSKEDEKSSINSDDRPSNQEMPMAQQELDVTRKKLEDLTRKYKALEAKSKAEIKFLAKEFKALQSSQTALKEQHERTTREKSEIEKHLEQERTI REHLQDQQKRLVHDCRTLWSQLQECNLSLSKVDDADDFVLNSSLDGALDLLETFDDRISLILAEAQLLAAEDEKSLNCEELRIFLAEIVADNAKLRKQVN SATRRALRKGTITRGNGESSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32160			Phox (PX) domain-containing pr...		Lus10001496 [exp]	0	1
AT5G55860			Plant protein of unknown funct...		Lus10016626 [exp]	1.4	0.9475
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10026166 [exp]	2.4	0.9424
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042816 [exp]	6.9	0.9341
AT5G55060			unknown protein		Lus10040061 [exp]	7.3	0.9403
AT4G26060			Ribosomal protein L18ae family...		Lus10011943 [exp]	7.4	0.9350
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Lus10030375 [exp]	7.7	0.9369
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10042608 [exp]	8.8	0.9268
AT3G53490			unknown protein		Lus10015041 [exp]	8.9	0.9301
AT1G11340			S-locus lectin protein kinase ...		Lus10013244 [exp]	9.9	0.9298
AT1G33780			Protein of unknown function (D...		Lus10009463 [exp]	11.0	0.9169

Compare expression of checked genes

Lus10001496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.