Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32250 704 / 0 Protein kinase superfamily protein (.1.2.3) AT5G13530 136 / 5e-33 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT2G17700 103 / 5e-23 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G38470 96 / 2e-20 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT4G26890 93 / 5e-20 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT4G35780 91 / 7e-19 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT4G23050 87 / 1e-17 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT5G03730 85 / 7e-17 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT3G13530 85 / 1e-16 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT2G32510 82 / 1e-16 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002923 [exp] 1151 / 0 AT4G32250 716 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10009358 [exp] 627 / 0 AT4G32250 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10019343 [exp] 584 / 0 AT4G32250 627 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10039491 [exp] 135 / 1e-32 AT5G13530 2343 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10023989 [exp] 96 / 2e-20 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10022653 [exp] 94 / 4e-20 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 96 / 6e-20 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10030621 [exp] 91 / 2e-19 AT3G01490 284 / 2e-92 Protein kinase superfamily protein (.1) Lus10012517 [exp] 92 / 3e-19 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G026400 [exp] 811 / 0 AT4G32250 809 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.006G255700 [exp] 811 / 0 AT4G32250 828 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G029600 [exp] 129 / 1e-30 AT5G13530 2587 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.001G274900 [exp] 126 / 6e-30 AT5G13530 1856 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.004G179100 [exp] 106 / 2e-24 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 102 / 4e-23 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 102 / 2e-22 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 99 / 2e-21 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.009G139400 [exp] 99 / 2e-21 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 98 / 4e-21 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10001499 pacid=23177065 polypeptide=Lus10001499 locus=Lus10001499.g ID=Lus10001499.BGIv1.0 annot-version=v1.0 ATGGTTGGAAAAGTTGTTCCAGCACATCAGCCTGTCTCGTTCGAGTACGAGCTCTACGAAGGCGATCCGGAGAATCTCACAACAGTGGTAGTCTCGTCAA GCCAGTCAACTCCATGGATCGATCCTGCAGCTTTGAAGCTTAGACAAAGAATCGGGAGGGGACCTTTTGGTGATGTTTGGCTGGCTACCTTTCGCCGTTC TGATGAAGAATCCTGTGAAGTTGCTGTCAAGATGCTGTATCCAGTGAAGGAGGATCACGTTACAGTTTTGCTGGATAAGTTCAATGATTTGTTTCTGAAA CGTGAAGGTTTACACTGTGTGGCTTTGCTCCATGGAATCTCCGTTCTAAATGGAAAGGTTTGTTTGCTTATGAAGTTCTATGAAGGTTCTGTAGGAGATA AGATAGCCTTCCGCAAAGGGGGAAAGCTCCCATTATCTGATGTTTTGAGGTATGGAACACAGTTAGCTCAGGGGATATCTGAGTTGCACGAGAGAGATAT CCTAGTTCTCAACCTCAAACCTTCGAACTTTCTTGTCGATGAAAACGACGAGGCGGTTCTGGGCGACATTGGGATTCCTTACATACTTCTTGGAATCCCA TCATCTGGCTTGGATATGTGCCGCAGGCTTGGGACCCCGAATTACATGGCTCCGGAACAATGGCAACCCGAAGTGAGAGGCCCTCTGTCCCTGGAGGCTG ACGTGTGGGGGTTTGGGTGCAGTGTTGTGGAGATGTTGACTGGTGTTCAGCCATGGTGTGGGAAATCGGTCGAGGAAATTTATGACATGGTGGTTACAAA GCATAAGAAACCAGCCGTTCCTGAAAACCTTCCTCCTCCGGTTAAAACTATTCTCCATGGCTGCTTCGAGTATGACTTCAGGAATCGTCCTTTGATGACT GATGTATTGCATGTTTTCAGAAGGCAAGTTTCCGAGTTGAATTCTCAGAATGCAGTATATGGCAATGATGGCTGGACAGGACTAGACAGCATACTGATCT CAGAAGCATCGGGTGGTGCTAACTACACAGAGTGGTCTGTTACAAAGGATCATCTCGAAATTGGAGATATAGTCCGATCAAGAAAGCCATGTTACTCGTG CAAGCCAGAAAATATGCAGGTCCCAGAAGGAACAGTAGTGGGTACAGAACAAGACAACGACGACCATGGTTTCTTACTGGTGAGAGTACACGGCATCCAC GACCCTTTGCGAGTCCCAACCGCCACCTTGGAACGGGTGAGCTTCCGCTTGGCAGCAGGGGATTGGGTCCGACTGAAGGAAGGAGGCGGTACGAGCAACA ACCACTCGCCAGTCGGTATTCTGCATTCGATCACTCGGGATGGTAGTGTTTCCGTTGGCTTTATAGGACTAGACACATTTTGGACAGGGAATTCTTCACA GCTTCAGATGGCGGAAGCTTACTTTGTCGGTCAGTTTGTAAGGCTGAGAGCTAACGTTCTAAGTCCCAAATTCGAATGGCCTCGTAGCCCAAGTGGTGCC TGGGTTACTGGGAAGATCGGTTGGATTCTTCCCAATGGATGCCTGGTCGTCAAATTCCCACGAAGACTGCCTTTTGGAAAGGAAAACAGCAGCTTCCACG CTGATCCAGCTGAAGTAGAAACCGTCTCTTTCGGAAACTCGCTTGGAATAGTGAAGAAATACCAACATCTTGAGGACTTCCATTGGTCCGTGAGGCCTCT TCTCATCGCGCTCGCATTTTTTACAGCTATGAAGGTCGGATTTTGCATCGGCAGGAAATCAAAGAAGCAACAGAGTGGCTTGATTGTAAGCAGCAGCCCG GATAGCCCAACCAGTGGCAATGGTGGTGGCAGCAACAATTCCTCCAAGTGGCTTCCGAAAATCCTGACCGGTCCTTCCCGGTAA
AA sequence Show only first row Show all	>Lus10001499 pacid=23177065 polypeptide=Lus10001499 locus=Lus10001499.g ID=Lus10001499.BGIv1.0 annot-version=v1.0 MVGKVVPAHQPVSFEYELYEGDPENLTTVVVSSSQSTPWIDPAALKLRQRIGRGPFGDVWLATFRRSDEESCEVAVKMLYPVKEDHVTVLLDKFNDLFLK REGLHCVALLHGISVLNGKVCLLMKFYEGSVGDKIAFRKGGKLPLSDVLRYGTQLAQGISELHERDILVLNLKPSNFLVDENDEAVLGDIGIPYILLGIP SSGLDMCRRLGTPNYMAPEQWQPEVRGPLSLEADVWGFGCSVVEMLTGVQPWCGKSVEEIYDMVVTKHKKPAVPENLPPPVKTILHGCFEYDFRNRPLMT DVLHVFRRQVSELNSQNAVYGNDGWTGLDSILISEASGGANYTEWSVTKDHLEIGDIVRSRKPCYSCKPENMQVPEGTVVGTEQDNDDHGFLLVRVHGIH DPLRVPTATLERVSFRLAAGDWVRLKEGGGTSNNHSPVGILHSITRDGSVSVGFIGLDTFWTGNSSQLQMAEAYFVGQFVRLRANVLSPKFEWPRSPSGA WVTGKIGWILPNGCLVVKFPRRLPFGKENSSFHADPAEVETVSFGNSLGIVKKYQHLEDFHWSVRPLLIALAFFTAMKVGFCIGRKSKKQQSGLIVSSSP DSPTSGNGGGSNNSSKWLPKILTGPSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32250			Protein kinase superfamily pro...		Lus10001499 [exp]	0	1
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020322 [exp]	3.6	0.9054
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10043381 [exp]	3.7	0.9049
AT4G19670			RING/U-box superfamily protein...		Lus10038341 [exp]	4.7	0.8710
AT1G63850			BTB/POZ domain-containing prot...		Lus10040458 [exp]	5.3	0.8763
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10035193 [exp]	6.3	0.8717
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10032476 [exp]	6.6	0.8542
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10035285 [exp]	7.5	0.8657
AT3G48860			unknown protein		Lus10032546 [exp]	8.1	0.8660
AT3G43230			RING/FYVE/PHD-type zinc finger...		Lus10027659 [exp]	9.2	0.8968
AT2G22120			RING/FYVE/PHD zinc finger supe...		Lus10019687 [exp]	10.7	0.8375

Compare expression of checked genes

Lus10001499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.