Plant FIBer expression Database

Lus10001500 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35530 42 / 4e-05 phosphatidylinositolglycan-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002922
[exp]
0 / 1 AT4G35530 80 / 2e-21 phosphatidylinositolglycan-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G026700
[exp]
68 / 1e-14 AT4G35530 194 / 2e-63 phosphatidylinositolglycan-related (.1)
Potri.006G255301
[exp]
54 / 1e-09 AT4G35530 162 / 3e-51 phosphatidylinositolglycan-related (.1)
PFAM info
Representative CDS sequence
>Lus10001500 pacid=23177069 polypeptide=Lus10001500 locus=Lus10001500.g ID=Lus10001500.BGIv1.0 annot-version=v1.0
ATGAGTGGATCGAACATTACTCATCGGAGACTTACTTACACGAATGATCCAAAGGAGCATTCTGCAGCAATCGACGTACACCATGTAACAGTTCAGCAAA
GCAATCTGAAGATTTCATTCATTTCCCTTCTGGCTTTCACTTTCGCAGCCAATGGATTCTATCTCTTCCTAGTCTTGCGGAAGAATATTGCGCCGATTTG
TTCCAGTGAGCAAGATTCTGAAGCCGGTGCTGCCAGAGCGACTGACTCCAGTCACTTGTTACTGGATTCTATGTTTGATTCTACGGGAGGGGGAGGAACT
AACATTGATTTTCAAGGCATGCTCATTCGATATCTTTTTCGAAGATCTTTTCCACAAAACTTAGAGGTTAGCATTTTGGTGATTTTGGTTTTTTTTGTTT
TTGTTCAGGAGCTGCATCCACCATTGAAGATGCTGGTTCCTATATGGAAGGCATTGTGCTGTGTATCTGGAGACAAAGCTTGA
AA sequence
>Lus10001500 pacid=23177069 polypeptide=Lus10001500 locus=Lus10001500.g ID=Lus10001500.BGIv1.0 annot-version=v1.0
MSGSNITHRRLTYTNDPKEHSAAIDVHHVTVQQSNLKISFISLLAFTFAANGFYLFLVLRKNIAPICSSEQDSEAGAARATDSSHLLLDSMFDSTGGGGT
NIDFQGMLIRYLFRRSFPQNLEVSILVILVFFVFVQELHPPLKMLVPIWKALCCVSGDKA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10001500
[exp]
0 1
AT5G60790 ABCF1, ATGCN1 ARABIDOPSIS THALIANA GENERAL C... Lus10038681
[exp]
22.4 0.7206
AT3G58140 phenylalanyl-tRNA synthetase c... Lus10018853
[exp]
27.9 0.7098
AT5G20520 WAV2 WAVY GROWTH 2, alpha/beta-Hydr... Lus10011949
[exp]
56.9 0.6741
AT3G20320 ABCI15, TGD2 ATP-binding cassette I15, trig... Lus10007420
[exp]
73.6 0.6841
AT1G12700 RPF1 RNA processing factor 1, ATP b... Lus10014244
[exp]
78.2 0.6695
AT5G01340 AtmSFC1 mitochondrial succinate-fumara... Lus10005045
[exp]
93.8 0.6643
AT3G19260 LOH2, LAG1 HOMO... LONGEVITY ASSURANCE GENE1 HOMO... Lus10019859
[exp]
106.9 0.6452
AT1G11660 heat shock protein 70 (Hsp 70)... Lus10019627
[exp]
120.6 0.6434
AT1G62930 RPF3 RNA processing factor 3, Tetra... Lus10003429
[exp]
140.8 0.6393
AT4G27680 P-loop containing nucleoside t... Lus10022361
[exp]
205.8 0.6208

Lus10001500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.