Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25430 836 / 0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT4G32285 825 / 0 ENTH/ANTH/VHS superfamily protein (.1.2) AT1G03050 466 / 3e-157 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 292 / 1e-89 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 263 / 6e-79 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 217 / 3e-62 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 151 / 1e-38 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 150 / 1e-38 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 147 / 4e-37 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 137 / 4e-34 ENTH/ANTH/VHS superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002920 [exp] 1136 / 0 AT2G25430 909 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10019402 [exp] 575 / 0 AT2G25430 580 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10043260 [exp] 490 / 7e-167 AT4G32285 506 / 2e-173 ENTH/ANTH/VHS superfamily protein (.1.2) Lus10035340 [exp] 302 / 8e-93 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1) Lus10020824 [exp] 271 / 5e-82 AT1G03050 636 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10029998 [exp] 259 / 4e-74 AT1G05020 437 / 5e-139 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 232 / 1e-67 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 224 / 9e-65 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10012686 [exp] 211 / 1e-59 AT1G03050 642 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G026900 [exp] 911 / 0 AT2G25430 857 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.006G255000 [exp] 905 / 0 AT2G25430 866 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.006G066900 [exp] 663 / 0 AT4G32285 665 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.018G128200 [exp] 642 / 0 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.006G118100 [exp] 463 / 2e-156 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.002G224500 [exp] 305 / 1e-94 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1) Potri.014G158600 [exp] 296 / 2e-91 AT1G05020 493 / 2e-167 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 154 / 6e-40 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 154 / 1e-39 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 151 / 7e-39 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Lus10001502 pacid=23177066 polypeptide=Lus10001502 locus=Lus10001502.g ID=Lus10001502.BGIv1.0 annot-version=v1.0 ATGGCGCCGAGCACGATCCGGAAGGCGATCGGGACGGTGAAGGATCAGACGAGTATTGGACTGGCGAAAGTGGCGAGCAACATGGCGCCGGAGCTGGAAG TAGCGATCGTGAAAGCTACCAGCCACGACGATGACCCTGCCAGCGAGAAGTACATACGGGAGATCTTGAACTTGACCTCTTACTCGAGAGGATACGTCCA CGCTTGTGTAGCTGCTGTTTCGAAGCGGCTGGGGAAGACTCGGGACTGGATCGTGGCTCTGAAAGCGCTCATGCTCGTCCACCGCCTCCTCAACGAAGGA GATCCGCTCTTCCAGGAGGAGATCCTGTACGCTACAAGGAGAGGGACGAGGCTGCTGAACATGTCGGATTTCAGGGACGAGGCGCATTCCAGCTCATGGG ATCATTCCGCTTTCGTTAGGACTTACGCTATGTTCCTGGATCAGCGGCTTGAGCTTGTTTTGTTCGACAGGAAAGGAGCTGTTACTTCCTCTGGTGCAGG GAGTGCACACGGAGGAGAGATCGAGAGGTATGGAGCGAGAGGGGATTTCAGATCTCCGCCGCCGAGGACGTACGAGTACAGCGACTATGGCGATCATAGG GGAGCAACTGACTCTGGATTTGGGAATGGGAACCCTGGAATGACTAGGAGGTCTAGATCATTTGGAGACATGAGCGAGGCTGCTGGGAGGGAAGGCTCCG TAAAGGCAATTACTCCGCTTAGAGAGATGAAGCCGGAGAGGATCTTCGGTAAGATGGCGCATTTGCAGAGACTATTGGATCGGTTTCTGTCTTGCAGGCC TACAGGGCTGGCGAAAACAAGCAGGCTGATACTGCTTGCGGTTTACCTTGTTGTGAAGGAGAGTTTCCAGTTATACGCTGATATATGCGAGGTTTTAGCT GTGTTGCTTGATAAATTCTTCGATATGGAGTACCCAGATTGTGTCAAGGCATTAGACGCCTATGCTAGTGCTGCCAAGCAGATTGATGAGCTTATAGCCT TCTACAACTGGTGTAAAGACACTGGGATAGCTAGATCTTCAGAATATCCAGAGGTGCAAAGAATTACTGGGAAATTACTCGAGACATTGGAGGAATTCGT TAGGGACAGAGCGAAAAGACCCAAGAGTCCCGAGAGGATAGAGGCGGCACCTCCACCAGAACCAGAGCCTGTTCCTGATATGAATGAAATCAAAGCACTA CCCGCACCGGAGACTCCGGCACCACCTCCCCCGCCGGAACCAGAGCCAGAGCCTGCTAAGCCACAGTACACCGAAGATCTGGTCAATTTGAGGGAGGACA ATGTAAGTGCAGATGACCAAGGAAACAGATTTGCATTAGCATTGTTTGCAGGTCCAGCTGCAAACAAAGCCAACGGTTCGTGGGAGGCATTCCCATCCAA TGGAGGAAACCCTGAAGTGACCTCAGCTTGGCAGACACCAGCTGCCGAGCTAGGTAAAGCAGATTGGGAACTCGCCCTTGTCGAGACCGCCAGTAACTTA TCGAACCAGAAAGCAGCAATGGGAGGCGGCCTTGACCCACTACTCTTAAACGGAATGTACGATCAAGGAATGGTGAGGCAACATGTCAGCACCTCGCAAT TGAGCGGAGGGAGTGCTTCTAGTGTTGCATTGCCCGGACCGGCAGGGAAGACCAACACCCCAGTCTTGGCTCTCCCTGCACCGGACGGAACAGTTCAACC CGTGAATCAGGACCCTTTCGCAGCATCTTTGACAGTTCCACCTCCTTCCTACGTACAAATGGCTGATATGGAGAAGAAACAACACCTGCTCGTACAGGAA CAAGTGGTGTGGGAGCAGTACGCAAGAACTGGGATGCAAGGGCAAAGTAGCTTGTCCAGGATCAATGGACCTATGCCGTATCAATATGGGATGCCGATGC AGCCTCCGGTGAACGGAATGGGAACACCTGCCGGGTACTATTATACTCCTCCCTACTGA
AA sequence Show only first row Show all	>Lus10001502 pacid=23177066 polypeptide=Lus10001502 locus=Lus10001502.g ID=Lus10001502.BGIv1.0 annot-version=v1.0 MAPSTIRKAIGTVKDQTSIGLAKVASNMAPELEVAIVKATSHDDDPASEKYIREILNLTSYSRGYVHACVAAVSKRLGKTRDWIVALKALMLVHRLLNEG DPLFQEEILYATRRGTRLLNMSDFRDEAHSSSWDHSAFVRTYAMFLDQRLELVLFDRKGAVTSSGAGSAHGGEIERYGARGDFRSPPPRTYEYSDYGDHR GATDSGFGNGNPGMTRRSRSFGDMSEAAGREGSVKAITPLREMKPERIFGKMAHLQRLLDRFLSCRPTGLAKTSRLILLAVYLVVKESFQLYADICEVLA VLLDKFFDMEYPDCVKALDAYASAAKQIDELIAFYNWCKDTGIARSSEYPEVQRITGKLLETLEEFVRDRAKRPKSPERIEAAPPPEPEPVPDMNEIKAL PAPETPAPPPPPEPEPEPAKPQYTEDLVNLREDNVSADDQGNRFALALFAGPAANKANGSWEAFPSNGGNPEVTSAWQTPAAELGKADWELALVETASNL SNQKAAMGGGLDPLLLNGMYDQGMVRQHVSTSQLSGGSASSVALPGPAGKTNTPVLALPAPDGTVQPVNQDPFAASLTVPPPSYVQMADMEKKQHLLVQE QVVWEQYARTGMQGQSSLSRINGPMPYQYGMPMQPPVNGMGTPAGYYYTPPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25430			epsin N-terminal homology (ENT...		Lus10001502 [exp]	0	1
AT2G45010			PLAC8 family protein (.1.2)		Lus10038926 [exp]	1.0	0.9237
AT3G58050			unknown protein		Lus10021073 [exp]	2.8	0.9172
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10010933 [exp]	3.0	0.8938
AT2G26920			Ubiquitin-associated/translati...		Lus10036096 [exp]	4.5	0.9076
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	4.9	0.9057
AT5G11280			unknown protein		Lus10002030 [exp]	6.0	0.9175
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10001313 [exp]	6.6	0.9187
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10036739 [exp]	9.2	0.8755
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10036999 [exp]	9.8	0.8967
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10031535 [exp]	9.9	0.8974

Compare expression of checked genes

Lus10001502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.