Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32290 312 / 2e-104 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25330 293 / 3e-97 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G52060 205 / 3e-63 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G22070 189 / 6e-57 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G31350 132 / 2e-35 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G57270 123 / 1e-31 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2.3) AT2G19160 119 / 3e-30 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G25870 117 / 1e-29 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 113 / 3e-28 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 113 / 5e-28 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002919 [exp] 514 / 0 AT5G25330 389 / 4e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10028866 [exp] 211 / 3e-65 AT3G52060 393 / 1e-136 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10008954 [exp] 208 / 3e-64 AT3G52060 400 / 2e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10004106 [exp] 207 / 4e-63 AT5G22070 486 / 3e-172 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10025464 [exp] 131 / 1e-34 AT2G19160 550 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10006952 [exp] 123 / 2e-31 AT2G19160 503 / 9e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036774 [exp] 117 / 1e-29 AT5G16170 350 / 1e-118 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10026959 [exp] 116 / 4e-29 AT4G31350 490 / 8e-174 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10003499 [exp] 115 / 8e-29 AT3G21310 503 / 3e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G242900 [exp] 212 / 6e-66 AT3G52060 407 / 9e-143 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.008G018600 [exp] 209 / 8e-65 AT3G52060 407 / 2e-142 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.006G254800 [exp] 201 / 3e-62 AT4G32290 210 / 1e-65 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G215400 [exp] 193 / 6e-58 AT5G22070 421 / 1e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.009G017300 [exp] 192 / 1e-57 AT5G22070 418 / 7e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 125 / 1e-32 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G143900 [exp] 118 / 7e-30 AT2G19160 564 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G076600 [exp] 117 / 1e-29 AT2G19160 560 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 116 / 4e-29 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 110 / 4e-27 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10001503 pacid=23177073 polypeptide=Lus10001503 locus=Lus10001503.g ID=Lus10001503.BGIv1.0 annot-version=v1.0 ATGCTTTCCCCATCTCCTTTCTCTCTGTTCTGCACTCTCCTCCTCTGCTTACCCCTCGCCGTCTTCTTCACCGTCACCACTCCGACCACTACCACCCTCC ATTCCTCCGCTCCCCGCATCGTCCTCCCCACGGATGACGAATCCCTCCTCAAACTCGCCTCCCGGGTCGACCCGAATCCGAACCAACCGAAAAAATTAGC CTTTCTCTTCCTCACCACCACTCCTCTGCCTTTCGCTCCGCTATGGGAGCTCTTCTTCAACGGTAGCGAATCGAAAAAGGACGGTGAGCCACTGTATAAT GTATATGTTCATGCCGACCCGACCCGGATATACGACCCGGGTTTTGTGGGTGTGTTCGCTGGTCGGGTTGTTCACTCCAAGCCGACGAAACGTTTCAGTC CGAGTCTCATTTCGGCTGCTAGACGTTTACTCGCGCACGCGCTGCTCGACGACTCGTCGAATGCGGTTTTCGTGCTTCTATCTGCTTCTTGTGTACCTCT GCACTCGTTTGGGTTCACTTACCGGACGTTGACACGATCGGGGAAGAGCTTTATTGAAATTCTGGCGAATGAGACGGGGGCGCGTGGTAGGTGGATGGCA CGTGGGGAGGACGCGATGCTTCCGGAGGTGACGATGGAGGATTTCCGGATCGGCTCGCAGTTCTGGGCGCTGACACGTAAGCACGCGAGGGTGGTGGTGG AGGACCGAAGGATATGGCCCAAGTTCAATCGGACGTGCGTGAGGGTCGACACGTGTTACCCGGAGGAGAATTACTTCCCGACGCTTATCCATATGGTGGA CCCGCGGGGGGCCACGTCGGCGACGCTGACACACGTGGACTGGAGGGGGAGATTCGACGGGCATCCGAGGATGTACAAGAAGGAGGAGGTGGGTCGTGGG TTGATTGAAGGGTTGAGGAAGGGACGGCCGAGATATGGTTACGAGATGATGAGGATGATGAAGGGCTCGGATTCGTCAGCGGTGGAGGGACGGCGGCGGG ATCCGTTTTTGTTTGCGAGGAAGTTCTCGGCGGAGGCGGTTGGGCCGCTGTTGGAGATTGTGGCGGAGGTGATCTTGAGAGATTGA
AA sequence Show only first row Show all	>Lus10001503 pacid=23177073 polypeptide=Lus10001503 locus=Lus10001503.g ID=Lus10001503.BGIv1.0 annot-version=v1.0 MLSPSPFSLFCTLLLCLPLAVFFTVTTPTTTTLHSSAPRIVLPTDDESLLKLASRVDPNPNQPKKLAFLFLTTTPLPFAPLWELFFNGSESKKDGEPLYN VYVHADPTRIYDPGFVGVFAGRVVHSKPTKRFSPSLISAARRLLAHALLDDSSNAVFVLLSASCVPLHSFGFTYRTLTRSGKSFIEILANETGARGRWMA RGEDAMLPEVTMEDFRIGSQFWALTRKHARVVVEDRRIWPKFNRTCVRVDTCYPEENYFPTLIHMVDPRGATSATLTHVDWRGRFDGHPRMYKKEEVGRG LIEGLRKGRPRYGYEMMRMMKGSDSSAVEGRRRDPFLFARKFSAEAVGPLLEIVAEVILRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32290			Core-2/I-branching beta-1,6-N-...		Lus10001503 [exp]	0	1
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Lus10017095 [exp]	1.7	0.9282
AT5G19120			Eukaryotic aspartyl protease f...		Lus10021939 [exp]	4.9	0.9035
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10043039 [exp]	5.3	0.8524
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10040909 [exp]	5.7	0.8471
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10011137 [exp]	6.0	0.8697
AT1G53210			sodium/calcium exchanger famil...		Lus10028144 [exp]	6.9	0.8246
AT5G24490			30S ribosomal protein, putativ...		Lus10015569 [exp]	8.9	0.8611
AT5G60250			zinc finger (C3HC4-type RING f...		Lus10036128 [exp]	9.3	0.7154
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10008619 [exp]	10.0	0.8346
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006173 [exp]	10.7	0.7451

Compare expression of checked genes

Lus10001503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.