Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32295 207 / 2e-66 unknown protein AT3G24150 198 / 2e-61 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043262 [exp] 204 / 2e-63 AT3G24150 258 / 7e-84 unknown protein Lus10019404 [exp] 198 / 7e-62 AT3G24150 251 / 6e-82 unknown protein Lus10002918 [exp] 122 / 4e-34 AT4G32295 98 / 1e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G254700 [exp] 223 / 3e-70 AT4G32295 243 / 8e-79 unknown protein Potri.018G027100 [exp] 222 / 7e-70 AT4G32295 238 / 6e-77 unknown protein Potri.018G128700 [exp] 190 / 8e-59 AT3G24150 248 / 1e-80 unknown protein Potri.006G067100 [exp] 193 / 2e-58 AT3G24150 259 / 2e-83 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001504 pacid=23177061 polypeptide=Lus10001504 locus=Lus10001504.g ID=Lus10001504.BGIv1.0 annot-version=v1.0 ATGGAGGCGAAGATGCAGCAGCGTAAACCAGGCACCAGACCTTATGAATGCGTCAGAAGAGCTTGGCACAGTGATAGACTCCAACCCATTCGTGGCTCCC TCATTCAAGAAATCTTCAGAGTGGTTAATGAGGTGCATAGCTCAATGACCAAGAAGAACAAGGAATGGCAGGATAAGCTCCCTGCTGTGGTTCTCAGAAC AGAAGAAATACTCTACTCCAAAGCCAATTCTCAAGCTGAGTATATGGACCTTACAACCCTTTGGGATCGGACCAATGATGCCATCAACACCATCATTCGA CGTGATGGCGATACTGAAACCGGCCAGTTCCTTCATCCTTGCATTGAAGCTGCACTGAATCTGGGTTGTCCTGCAACAAATGCCACTAGGAGCCAGAGAA ATTGCAGCAGTAGCAATCTAAGGTGCTACCTTACTAGTAACATTGTGCATAATGCTGCCATTCAGTCTGATCAAGCGATTGGATATTCAACCCATTTGAG AAAGGAATGCCGCACTGCAGTTTATCCCTTGTACTATGGAAATTTTGTTCACCAGGAGGAAAAGGAGTCGTATCAGATTGGGTTTGGAGCACGTCCGGGC AAGTTCTCGAAGCCTTTGAAAATGGGTCAATTGGATTCCGAGGATGTTCATTCTCGTCGAAACGAAGTCAAATGTGATCTGTCGCTGTGGTTGGGATGCC AGCCAGCTACTGCTGATGTTAGAGACAATAAAAAACAAGGTCTTTTGTTAAAGGGAAATCTGAATGGAGATGAGTTGCTTGGTGTTCAACTGAAGAAGAG AAAAGCCGATGTCTTTCCTCATCTTGTAGATGAACAACAACAACAACAACAACAACAACAACAGCAACACTTGTGCTTGAAACCAAGGCTTTCCATATGA
AA sequence Show only first row Show all	>Lus10001504 pacid=23177061 polypeptide=Lus10001504 locus=Lus10001504.g ID=Lus10001504.BGIv1.0 annot-version=v1.0 MEAKMQQRKPGTRPYECVRRAWHSDRLQPIRGSLIQEIFRVVNEVHSSMTKKNKEWQDKLPAVVLRTEEILYSKANSQAEYMDLTTLWDRTNDAINTIIR RDGDTETGQFLHPCIEAALNLGCPATNATRSQRNCSSSNLRCYLTSNIVHNAAIQSDQAIGYSTHLRKECRTAVYPLYYGNFVHQEEKESYQIGFGARPG KFSKPLKMGQLDSEDVHSRRNEVKCDLSLWLGCQPATADVRDNKKQGLLLKGNLNGDELLGVQLKKRKADVFPHLVDEQQQQQQQQQQQHLCLKPRLSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32295			unknown protein		Lus10001504 [exp]	0	1
AT2G15890		MEE14	maternal effect embryo arrest ...		Lus10027938 [exp]	15.7	0.7535
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Lus10018845 [exp]	16.9	0.7906
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10019247 [exp]	20.2	0.7889
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10039619 [exp]	36.3	0.7714
					Lus10029224 [exp]	66.5	0.7080
					Lus10008547 [exp]	74.4	0.7373
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Lus10040664 [exp]	81.0	0.7145
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10011578 [exp]	104.4	0.7115
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Lus10021994 [exp]	111.4	0.7401
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10006587 [exp]	161.0	0.7207

Compare expression of checked genes

Lus10001504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.