Plant FIBer expression Database

Lus10001505 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G06510 202 / 2e-64 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031457
[exp]
370 / 4e-131 AT1G06510 192 / 5e-61 unknown protein
Lus10031459
[exp]
267 / 1e-91 AT1G06510 148 / 9e-45 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G203100
[exp]
212 / 3e-68 AT1G06510 249 / 3e-82 unknown protein
PFAM info
Representative CDS sequence
>Lus10001505 pacid=23157241 polypeptide=Lus10001505 locus=Lus10001505.g ID=Lus10001505.BGIv1.0 annot-version=v1.0
ATGATGTTGCAGTTGCAGTTGCAGGGAGGGCGTTATGGTCCTTGTCCAGTTAGCTCAGTTCATTACAGTCTCAGATCCTCCCGACCGGCGCCGCCAGGTA
TCCCCGCCGTGTCTTGCTTCGCTTCCAGTACCAAACCCGCCAGCACCGAGCATCTCCGATCTCAGCTTCACCAACTCCGCTCCGAAGCCGACTCCGCCAG
AGCCGACGTAAACGGTGCAAGGCTGCGGTTGATGCGGTTGTCGGAGGCAGCAGAGAACCTTAGACGACAGGCAGCTGTCTGCGTTCAATCTCGACGAGAG
GACGAGGCAAGAGAACTGCTTTTCCAGAAGAAAATGGTTATGCAGGCTATTGACAAGTCCAAGAGTCGCATTGAAGTGCTCGATGAGCTTTGTTCGAAAC
TTAATGAGGCTATCTCTAGCAAAGAAACCCAGCTGATTGGCAATCTTGGTTCGGATCTTGATGTGGAGGAAGAAGATGGTTCTGGTCCGGTTCGAGTCGT
ATCTCCCAAGGCCAATGATGACACTCATGTGCAAGATTTGCAGCCTTGTGTAGATAAACTAGTAAATAACGGATTGAGTGGTGTGTCCTCTTACTATGAA
TTTTTGGAGCAGACGGATATACAGCTTAGCAAGATCGAAGCGCAGGTACTCACCATTCTGAATGATGAAGAGAAGCCTGATAATTTGAAAGTGAACCAAA
CGAAAGAGCTTCTCGTTAGCATCCGTGGCATTCGACACCAAGTTGCTGAGATGCTGGAAGGTAACGTTTAA
AA sequence
>Lus10001505 pacid=23157241 polypeptide=Lus10001505 locus=Lus10001505.g ID=Lus10001505.BGIv1.0 annot-version=v1.0
MMLQLQLQGGRYGPCPVSSVHYSLRSSRPAPPGIPAVSCFASSTKPASTEHLRSQLHQLRSEADSARADVNGARLRLMRLSEAAENLRRQAAVCVQSRRE
DEARELLFQKKMVMQAIDKSKSRIEVLDELCSKLNEAISSKETQLIGNLGSDLDVEEEDGSGPVRVVSPKANDDTHVQDLQPCVDKLVNNGLSGVSSYYE
FLEQTDIQLSKIEAQVLTILNDEEKPDNLKVNQTKELLVSIRGIRHQVAEMLEGNV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G06510 unknown protein Lus10001505
[exp]
0 1
AT2G30120 unknown protein Lus10026389
[exp]
1.0 0.9112
AT5G36930 Disease resistance protein (TI... Lus10007836
[exp]
3.2 0.8704
AT1G14790 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1... Lus10019164
[exp]
4.9 0.8524
AT1G67170 unknown protein Lus10030976
[exp]
5.7 0.8400
AT1G59650 CW14 Protein of unknown function (D... Lus10039463
[exp]
6.3 0.8536
Lus10013097
[exp]
6.9 0.8779
AT1G68930 pentatricopeptide (PPR) repeat... Lus10030908
[exp]
9.2 0.8374
AT1G03090 MCCA methylcrotonyl-CoA carboxylase... Lus10022078
[exp]
10.2 0.8434
AT4G24200 Transcription elongation facto... Lus10028515
[exp]
10.4 0.8562
AT1G79190 ARM repeat superfamily protein... Lus10016753
[exp]
11.0 0.8797

Lus10001505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.