Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50890 441 / 9e-155 alpha/beta-Hydrolases superfamily protein (.1) AT2G05260 147 / 1e-40 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G24230 144 / 9e-40 Lipase class 3-related protein (.1) AT4G10955 138 / 2e-37 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G24220 132 / 3e-35 Lipase class 3-related protein (.1) AT5G24180 125 / 2e-32 Lipase class 3-related protein (.1) AT5G24200 122 / 8e-32 alpha/beta-Hydrolases superfamily protein (.1) AT5G24210 107 / 5e-26 alpha/beta-Hydrolases superfamily protein (.1) AT5G24190 74 / 5e-15 Lipase class 3-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031455 [exp] 672 / 0 AT5G50890 478 / 4e-169 alpha/beta-Hydrolases superfamily protein (.1) Lus10020755 [exp] 523 / 0 AT5G50890 494 / 5e-175 alpha/beta-Hydrolases superfamily protein (.1) Lus10007331 [exp] 515 / 0 AT5G50890 487 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1) Lus10001819 [exp] 148 / 2e-41 AT4G10955 444 / 4e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10003188 [exp] 148 / 3e-41 AT4G10955 456 / 7e-162 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10018097 [exp] 140 / 4e-38 AT5G24230 357 / 2e-122 Lipase class 3-related protein (.1) Lus10023072 [exp] 138 / 2e-37 AT4G10955 441 / 2e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10022416 [exp] 118 / 7e-31 AT5G24230 268 / 7e-89 Lipase class 3-related protein (.1) Lus10032396 [exp] 92 / 9e-21 AT4G10955 206 / 3e-102 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204100 [exp] 471 / 7e-167 AT5G50890 537 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G058100 [exp] 464 / 3e-164 AT5G50890 550 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G090500 [exp] 149 / 2e-41 AT4G10955 472 / 9e-168 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G141100 [exp] 143 / 2e-39 AT4G10955 464 / 7e-165 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001506 pacid=23157253 polypeptide=Lus10001506 locus=Lus10001506.g ID=Lus10001506.BGIv1.0 annot-version=v1.0 ATGGTGGCAGGGGAACAGCAGAACAACGCCGTTCAGGTGCTGGAAGTTACTCCGGCGGCTGCTGCTCCGGCAACGCCACCGCACCCTTACGCGTTTCACG TCTCCGGGCCACGCAATGTTGCGTCTCTTAACTGGAGAGACCTCATCAGTTCCAGTTGGAAAGACGCCAACTACAAGAGGACAGTATTAGCATGCTTCAT CCAAGCAGTCTACTTGCTAGAACTCGACAGGCAAGAAAACAGGACACCAGCAACCGCTCTAGCTCCAACATGGTGGACAAGGTTCAAGTACAGGCTCACC CGAACCCTGACCGACGAAAGGGACGGATCCATATTCGGTGCAATCTTTGAATGGGATAGATCAGCAGCAGTTTCGGACATGATCTTCGTGAGGCCCAGCG GGGCTCCCAGGGCCGTCCTCACACTGCGTGGGACCTTGCTCAAAGGTCCCACGATGCGACGAGACATCGAGGACGACTTCCGTTTCCTCGCTTGGGAAAG CCTCAAGGGCTCGATCCGATTCAACGTGGCCCTGGAGGCGTTGAGGTCGGTCGCTCAGAGGTACGGTGGGAGCAATGTGTGTGTTGCAGGTCATTCCCTC GGAGCCGGGTTTGCTCTCCAGGTTGGCAAAGCATTGGCTAAAGAAAAGATGTTCATAGATGCACATCTGTTCAACCCGCCGTCGGTGTCTCTAGCTATGA GCTTCAGGAATTTCGGGGAGAGAGCTGAGTATGCCTGGAAGAAGTTGAAAGCAATGCTTCCTTATGCTGCTTCTGAAACCTCAGTTGCTGCCGAGATGCA GAATAGTTCGAATGCGATGGGGTCGAAGAAATGGGTGCCTCATTTGTATGTGAACAACAGTGATTACATATGCTGTCAGTACACCAGTCCAGAAGACGGA AATGGTAGTAGTAACATCGGTCATGTTTCGGCGAAGCTGTTCGTGATGGCGAAGGAGAAACAGAGGTTTCTCGAGGCGCACGGATTGGAGCAATGGTGGT CTGCTGATGCTGATCAGAGGTTGCTGACACCAGGAATCCCCAGTAGTAAGCTTATGAACAGGCAATTGAGGTCTTTGTATAACCTGCCAGCTCAGCCATG CTAA
AA sequence Show only first row Show all	>Lus10001506 pacid=23157253 polypeptide=Lus10001506 locus=Lus10001506.g ID=Lus10001506.BGIv1.0 annot-version=v1.0 MVAGEQQNNAVQVLEVTPAAAAPATPPHPYAFHVSGPRNVASLNWRDLISSSWKDANYKRTVLACFIQAVYLLELDRQENRTPATALAPTWWTRFKYRLT RTLTDERDGSIFGAIFEWDRSAAVSDMIFVRPSGAPRAVLTLRGTLLKGPTMRRDIEDDFRFLAWESLKGSIRFNVALEALRSVAQRYGGSNVCVAGHSL GAGFALQVGKALAKEKMFIDAHLFNPPSVSLAMSFRNFGERAEYAWKKLKAMLPYAASETSVAAEMQNSSNAMGSKKWVPHLYVNNSDYICCQYTSPEDG NGSSNIGHVSAKLFVMAKEKQRFLEAHGLEQWWSADADQRLLTPGIPSSKLMNRQLRSLYNLPAQPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10001506 [exp]	0	1
AT1G06475			unknown protein		Lus10025392 [exp]	2.4	0.8831
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10007702 [exp]	4.5	0.8903
AT5G42680			Protein of unknown function, D...		Lus10021759 [exp]	4.7	0.8720
AT3G43660			Vacuolar iron transporter (VIT...		Lus10025685 [exp]	4.9	0.8894
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012395 [exp]	5.5	0.8736
					Lus10041943 [exp]	6.3	0.8838
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032074 [exp]	6.9	0.8841
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025412 [exp]	7.9	0.8799
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10030975 [exp]	8.1	0.8833
					Lus10004679 [exp]	9.9	0.8738

Compare expression of checked genes

Lus10001506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.