Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G02930 82 / 6e-17 F-box/RNI-like superfamily protein (.1) AT4G14096 80 / 4e-16 F-box/RNI-like superfamily protein (.1) AT3G26922 77 / 2e-15 F-box/RNI-like superfamily protein (.1) AT5G02700 76 / 6e-15 F-box/RNI-like superfamily protein (.1) AT5G56420 74 / 2e-14 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT5G02920 72 / 2e-14 F-box/RNI-like superfamily protein (.1) AT1G32375 74 / 3e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G50710 74 / 4e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G78750 73 / 8e-14 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026190 [exp] 262 / 8e-85 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10002819 [exp] 257 / 4e-83 AT5G02910 77 / 1e-15 F-box/RNI-like superfamily protein (.1.2) Lus10042477 [exp] 243 / 2e-77 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029357 [exp] 235 / 4e-74 AT3G28410 79 / 1e-15 F-box/RNI-like superfamily protein (.1) Lus10007058 [exp] 227 / 2e-71 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10002239 [exp] 225 / 2e-70 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10024695 [exp] 223 / 8e-70 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10024696 [exp] 221 / 6e-69 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10029587 [exp] 219 / 7e-68 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 129 / 4e-34 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 118 / 4e-30 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G011200 [exp] 110 / 3e-27 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104300 [exp] 108 / 2e-26 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 108 / 3e-26 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 101 / 1e-23 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 64 / 5e-11 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024300 [exp] 62 / 2e-10 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.013G151200 [exp] 62 / 3e-10 AT4G03220 417 / 1e-141 Protein with RNI-like/FBD-like domains (.1) Potri.017G146300 [exp] 59 / 2e-09 AT5G02700 71 / 8e-13 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10001507 pacid=23157237 polypeptide=Lus10001507 locus=Lus10001507.g ID=Lus10001507.BGIv1.0 annot-version=v1.0 ATGAATAACAAGCGTCGGATTCAGTTAGGGGGTGTTGGATTAGCTTCTACTACTGATCGGTTAAGCCAGCTTCCGGATGCCATTCTTGATCACATACTTT CGTTCGTCGACACCAAAACTGTCGTTCAAACTTGTGTATTATCACGGCGGTGGAGATCTGTCTGGAAACATGTACCTGCTCTGTATTTGAATTGCGCTTC CTTTGGATTCAGCCAGGAGAGATTCACTAGGTTTGTGGACAAGGTTTTGTCACTCCGGCATCCACTTAAGGTCAATGAGATTAGCTACCATAATGGTGAA GATTATTCTTCGGGTGTAGATCCTTCGGAAGTAGATCCTCTTGTTGTAAGGGTCGTCGAGTATGCCGTCTCCCATGGCACAAGTCATTTAAGGGTATGCC TGGATTATGATCTATCCATCACCAATGGCTATAGATTCTCCGACTCCTACTCACCTATCTTTGAATATGATCTGGAAACTCTATCTTTATGGTGTTCCGT AATCGATGATCGGTTTCAAACGTTTTGTTTTCGGGCTCTGACAGACATAAGATTGTTCGCCTGTGATTTCCGGTCTGATCAGGAGCTTCTGGACCCTTTC TCTAAATTCCCATGTTTGAAGAACTTGGTGTTGGACACTCCCTACATGAACTTCAATGCCAGATTGAGGATTTCAGGACCGCAGCTGCATGACCTGAAAC TGTTAGATACGAATGTTAGAGATGTGGAAATCGCTGCACCAAAACTCAAGTTCTTGACACTTCACGAAGTCGAGGTATCCCTAGAGTTTGCAGAGCTAGA CCTACCTTCCCTCGATCATGCCGATATTCAATTCTTCGAAAACCATATTGCTGATGATCATCATGGTGGGCTTAACATTACAAAGGAAGACTGGGACTTC ATGTTCCAAGGTTGTCATAACGCGAAGTCTTTGACGCTGTGCAATTCAATCATCAAGGCCCTGTGCAAGATTTCCGACTTCTTAGAGCAGCGACCTTGCC CGTTTACGAGATTGGAGACTCTGAACCTGAGGATGAAGCCGAAGAACATACCGTATAAGGTGATGAGTTACTTCTTTAAAGGATCTTCTTGTGCAGCACC AAGTATCAATATTATATAA
AA sequence Show only first row Show all	>Lus10001507 pacid=23157237 polypeptide=Lus10001507 locus=Lus10001507.g ID=Lus10001507.BGIv1.0 annot-version=v1.0 MNNKRRIQLGGVGLASTTDRLSQLPDAILDHILSFVDTKTVVQTCVLSRRWRSVWKHVPALYLNCASFGFSQERFTRFVDKVLSLRHPLKVNEISYHNGE DYSSGVDPSEVDPLVVRVVEYAVSHGTSHLRVCLDYDLSITNGYRFSDSYSPIFEYDLETLSLWCSVIDDRFQTFCFRALTDIRLFACDFRSDQELLDPF SKFPCLKNLVLDTPYMNFNARLRISGPQLHDLKLLDTNVRDVEIAAPKLKFLTLHEVEVSLEFAELDLPSLDHADIQFFENHIADDHHGGLNITKEDWDF MFQGCHNAKSLTLCNSIIKALCKISDFLEQRPCPFTRLETLNLRMKPKNIPYKVMSYFFKGSSCAAPSINII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10001507 [exp]	0	1
AT2G31890		ATRAP	RAP (.1)		Lus10006143 [exp]	4.2	0.6817
					Lus10008157 [exp]	5.2	0.7212
AT5G64830			programmed cell death 2 C-term...		Lus10017236 [exp]	5.3	0.6940
AT4G00755			F-box family protein (.1.2)		Lus10041367 [exp]	8.2	0.5764
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Lus10027807 [exp]	14.7	0.6502
AT5G07610			F-box family protein (.1)		Lus10014320 [exp]	15.5	0.6363
AT5G14780		FDH	formate dehydrogenase (.1)		Lus10014535 [exp]	16.2	0.7005
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10037083 [exp]	19.6	0.7058
AT1G30040		ATGA2OX2	GIBBERELLIN 2-OXIDASE 2, gibbe...		Lus10023311 [exp]	19.9	0.6297
AT5G24690			Protein of unknown function (D...		Lus10022966 [exp]	21.0	0.5994

Compare expression of checked genes

Lus10001507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.