Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34180 281 / 2e-95 Cyclase family protein (.1) AT4G35220 280 / 1e-94 Cyclase family protein (.1) AT1G44542 268 / 7e-90 Cyclase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031454 [exp] 518 / 0 AT4G34180 274 / 1e-92 Cyclase family protein (.1) Lus10031453 [exp] 423 / 8e-151 AT4G34180 278 / 4e-94 Cyclase family protein (.1) Lus10001509 [exp] 398 / 1e-141 AT4G34180 268 / 8e-91 Cyclase family protein (.1) Lus10014091 [exp] 286 / 1e-97 AT1G44542 333 / 3e-116 Cyclase family protein (.1) Lus10014092 [exp] 277 / 2e-90 AT4G35220 366 / 3e-125 Cyclase family protein (.1) Lus10027872 [exp] 265 / 1e-89 AT4G35220 310 / 8e-108 Cyclase family protein (.1) Lus10019822 [exp] 263 / 7e-88 AT4G35220 396 / 1e-140 Cyclase family protein (.1) Lus10019823 [exp] 102 / 2e-27 AT4G35220 110 / 2e-31 Cyclase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G301501 [exp] 280 / 1e-94 AT4G35220 397 / 4e-141 Cyclase family protein (.1) Potri.009G097300 [exp] 278 / 2e-94 AT4G35220 343 / 6e-120 Cyclase family protein (.1) Potri.001G301600 [exp] 277 / 1e-93 AT4G35220 363 / 1e-127 Cyclase family protein (.1) Potri.001G301700 [exp] 274 / 2e-92 AT4G35220 348 / 1e-121 Cyclase family protein (.1) Potri.009G097201 [exp] 241 / 2e-80 AT4G35220 291 / 1e-100 Cyclase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF04199 [flax] [poplar] Cyclase Putative cyclase
Representative CDS sequence Show only first row Show all	>Lus10001508 pacid=23157249 polypeptide=Lus10001508 locus=Lus10001508.g ID=Lus10001508.BGIv1.0 annot-version=v1.0 ATGAGCAAGCAACAAATTCTGTCTCCTCGGGTCCTTTTGGTCATTCTACTAGTGGGAGGCATTTTGGGAAGCGACGCAGACGGAGATGTAACGCCGTGCT CGAAAGTCAAAGTACCCCCCGCGGAGGAGAGGGAGGTGTACGGCGAGGGAGGCCGGTTGATCGACATCTCCCACAGGATTACCCCACAGATGCCGAAATT CGGGGTCGAGAGCGGAGTGGGGACAGTGTATACACTCACCGAGAGTATGAAGGATGGGTACCTGGCCAACGTCGGCGAGTTCAATAACCTCGGTACACAT ACCGGAACCCACGTGGACTCGCCCGGCCATTTCTGCCAGGACTATTTCGACACTGGCTACACCGTTGGATCGCTTGACTTGGACACCCTTAATGGTCCGG CATTAGTGGTTGAAGTTCCTCGGCACAGTAACATAACCGATAAGGTGATGGAATCGTTGAACATTCCGAAAGGAATAAAGCGTGTGCTCTTCAGAACTCT CAACACTGATAGGCAACTGATGAAGAAGACGGAGTTCGATTCGACGTACACCGGGTTCAGAACCAGTGGAGCTGAATGGCTAGTAAAGAACACAGACATC AAGCTTGTAGGAATCGACTACTTATCTGTTTCGATAGTGGACGATGCTGCACCGGTTCACCGCGAATTCCTCAAGGGCAGGGACATTATTCCAGTGGAAG GGTTGAATCTCGACAACGTCAAAGCAGGGGTGTACGATGTTCATTGTCTGCCTCTGAGGGTGATCGGAGCCGATGGAACTCCGTCTCGATGCATCGCCAT CAAACCCGAACTCAAGAGTGCCATCATTTGA
AA sequence Show only first row Show all	>Lus10001508 pacid=23157249 polypeptide=Lus10001508 locus=Lus10001508.g ID=Lus10001508.BGIv1.0 annot-version=v1.0 MSKQQILSPRVLLVILLVGGILGSDADGDVTPCSKVKVPPAEEREVYGEGGRLIDISHRITPQMPKFGVESGVGTVYTLTESMKDGYLANVGEFNNLGTH TGTHVDSPGHFCQDYFDTGYTVGSLDLDTLNGPALVVEVPRHSNITDKVMESLNIPKGIKRVLFRTLNTDRQLMKKTEFDSTYTGFRTSGAEWLVKNTDI KLVGIDYLSVSIVDDAAPVHREFLKGRDIIPVEGLNLDNVKAGVYDVHCLPLRVIGADGTPSRCIAIKPELKSAII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34180			Cyclase family protein (.1)		Lus10001508 [exp]	0	1
AT3G63110		ATIPT3	isopentenyltransferase 3 (.1)		Lus10012372 [exp]	2.0	0.8813
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039701 [exp]	2.6	0.9025
AT1G80870			Protein kinase superfamily pro...		Lus10014361 [exp]	6.9	0.8522
AT1G30910			Molybdenum cofactor sulfurase ...		Lus10018692 [exp]	9.2	0.8355
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Lus10031271 [exp]	10.2	0.8554
					Lus10014171 [exp]	12.1	0.8704
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10031455 [exp]	15.0	0.8657
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10004373 [exp]	16.6	0.8251
AT3G63110		ATIPT3	isopentenyltransferase 3 (.1)		Lus10028015 [exp]	17.8	0.8560
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Lus10033097 [exp]	19.8	0.8393

Compare expression of checked genes

Lus10001508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.