Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34180 269 / 6e-91 Cyclase family protein (.1) AT4G35220 266 / 1e-89 Cyclase family protein (.1) AT1G44542 257 / 3e-86 Cyclase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031453 [exp] 486 / 2e-176 AT4G34180 278 / 4e-94 Cyclase family protein (.1) Lus10031454 [exp] 405 / 2e-144 AT4G34180 274 / 1e-92 Cyclase family protein (.1) Lus10001508 [exp] 399 / 9e-142 AT4G34180 281 / 2e-95 Cyclase family protein (.1) Lus10014091 [exp] 271 / 5e-92 AT1G44542 333 / 3e-116 Cyclase family protein (.1) Lus10014092 [exp] 273 / 1e-89 AT4G35220 366 / 3e-125 Cyclase family protein (.1) Lus10019822 [exp] 258 / 2e-86 AT4G35220 396 / 1e-140 Cyclase family protein (.1) Lus10027872 [exp] 254 / 1e-85 AT4G35220 310 / 8e-108 Cyclase family protein (.1) Lus10019823 [exp] 99 / 2e-26 AT4G35220 110 / 2e-31 Cyclase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G097300 [exp] 274 / 6e-93 AT4G35220 343 / 6e-120 Cyclase family protein (.1) Potri.001G301700 [exp] 266 / 8e-90 AT4G35220 348 / 1e-121 Cyclase family protein (.1) Potri.001G301600 [exp] 265 / 3e-89 AT4G35220 363 / 1e-127 Cyclase family protein (.1) Potri.001G301501 [exp] 256 / 1e-85 AT4G35220 397 / 4e-141 Cyclase family protein (.1) Potri.009G097201 [exp] 229 / 4e-76 AT4G35220 291 / 1e-100 Cyclase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF04199 [flax] [poplar] Cyclase Putative cyclase
Representative CDS sequence Show only first row Show all	>Lus10001509 pacid=23157245 polypeptide=Lus10001509 locus=Lus10001509.g ID=Lus10001509.BGIv1.0 annot-version=v1.0 ATGCCGACAATCTCGCCGACCAAAGTGCCACCGGCACAGGAGAGGGAGGTGTACGATGACGGTAGGCTGATCGACGTTACCCACAGGGTGACCCCAGAGA TGCCAAAGTTCGGCAAGGATACCGAAGTCGGGACAGTGGTCGCACTTGTCGAGAGGCTCCTGGATGGAGACCAGGCCAACGTGGGCGAGATCAATAAACT CGGTACTCATACCGGAACCCACGTCGATTCCCCGGGCCATTTCTGCCAGGACTATTATGTAACTGGTTACACTGTTGGATCCCTCGACTTGTACACCCTT AATGGTCCAGCATTAGTGGTTGAAGTCCCTCGAGACAGTAACATAACCGATAAGATGATGCAGTCGTTGAATATTCCGGAAGGAACAGAGCGTGTGCTAT TTAGAACTCTGAATACTGATAGGCACCTCATGAAGAAGACGAAGTTCGATTCGAGTTACACCGGATTCACAACCAGCGGAGCTAAGTGGCTTGTTGAGAA CACAGACATCCAGCTTGTAGGCATCGACTACTTATCTGTTTCGATAGTGGACGATGCCACCCCAGTTCATCGCGAATTCCTCAAGGGCAGGGACATTATT CCGGTGGAAGGGATGAATCTCGACAACGTTAAAGCAGGGGAGTACGATGTTCATTGTCTGCCTCTGAGGTTGATCGGGGCCGATGCAACTCCATCTCGAT GCATCGTCATGAAACCAAATCTCAAGAGGGCACAATTGCTTGACGTGATTGATGATTAG
AA sequence Show only first row Show all	>Lus10001509 pacid=23157245 polypeptide=Lus10001509 locus=Lus10001509.g ID=Lus10001509.BGIv1.0 annot-version=v1.0 MPTISPTKVPPAQEREVYDDGRLIDVTHRVTPEMPKFGKDTEVGTVVALVERLLDGDQANVGEINKLGTHTGTHVDSPGHFCQDYYVTGYTVGSLDLYTL NGPALVVEVPRDSNITDKMMQSLNIPEGTERVLFRTLNTDRHLMKKTKFDSSYTGFTTSGAKWLVENTDIQLVGIDYLSVSIVDDATPVHREFLKGRDII PVEGMNLDNVKAGEYDVHCLPLRLIGADATPSRCIVMKPNLKRAQLLDVIDD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34180			Cyclase family protein (.1)		Lus10001509 [exp]	0	1
AT4G34180			Cyclase family protein (.1)		Lus10031453 [exp]	1.0	0.9984
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10039541 [exp]	1.4	0.9966
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10038790 [exp]	3.9	0.9737
					Lus10007415 [exp]	4.2	0.9772
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10014184 [exp]	6.0	0.9771
AT1G10880			Core-2/I-branching beta-1,6-N-...		Lus10026386 [exp]	8.5	0.9490
AT1G75050			Pathogenesis-related thaumatin...		Lus10018804 [exp]	9.1	0.9227
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031834 [exp]	9.9	0.9594
AT4G02690			Bax inhibitor-1 family protein...		Lus10004078 [exp]	10.4	0.9653
AT5G03260		LAC11	laccase 11 (.1)		Lus10002227 [exp]	10.4	0.9722

Compare expression of checked genes

Lus10001509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.