Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 165 / 2e-47 O-methyltransferase family protein (.1) AT4G35150 140 / 2e-38 O-methyltransferase family protein (.1) AT5G54160 127 / 2e-33 ATOMT1 O-methyltransferase 1 (.1) AT5G53810 120 / 2e-30 O-methyltransferase family protein (.1) AT1G51990 118 / 4e-30 O-methyltransferase family protein (.1.2) AT3G53140 112 / 5e-28 O-methyltransferase family protein (.1) AT1G77520 103 / 2e-24 O-methyltransferase family protein (.1) AT1G33030 102 / 2e-24 O-methyltransferase family protein (.1) AT1G63140 101 / 9e-24 O-methyltransferase family protein (.1.2) AT1G77530 100 / 2e-23 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018629 [exp] 441 / 4e-155 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10018628 [exp] 396 / 2e-137 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10017691 [exp] 326 / 8e-110 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1) Lus10033656 [exp] 304 / 2e-101 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10017699 [exp] 296 / 3e-98 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10033655 [exp] 250 / 3e-80 AT4G35150 193 / 3e-58 O-methyltransferase family protein (.1) Lus10013945 [exp] 246 / 9e-79 AT4G35160 181 / 1e-53 O-methyltransferase family protein (.1) Lus10038331 [exp] 251 / 1e-78 AT4G35160 197 / 8e-58 O-methyltransferase family protein (.1) Lus10033653 [exp] 244 / 8e-78 AT4G35150 172 / 2e-50 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G122400 [exp] 332 / 2e-112 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 328 / 7e-111 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 322 / 1e-108 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 320 / 6e-108 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 320 / 1e-107 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 316 / 3e-106 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 311 / 6e-104 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 303 / 3e-101 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 284 / 2e-93 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 276 / 2e-90 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10001510 pacid=23157247 polypeptide=Lus10001510 locus=Lus10001510.g ID=Lus10001510.BGIv1.0 annot-version=v1.0 ATGGGCTCGGTCAACGGCGATATCAAGGCCGAAACGACGTCGTCGTCGGAGCTACTCAAAGCTCAGACCCACGTATGGAACAGCACCTTCAGCTTCGTCA CGTCCATGTCACTAAAATGCGCCGTCCAGCTAGGCATCCCGGACGTCGTCAACTCCAACGCCGGCGGCAAACCCATCTCCGTCCCTGACCTCATTGCCGC CTTGAAAATCCCGCCAACAAAATCCCCCCACCTCCACCGCCTCCTCCGAGTCCTCGTCCACTCCGGCTTCCTCATCTCCGACAAAGGCTACTACTCTCTC ACAACCGCCGGCAAGCTCCTCCGCAAGGACAGCCCATCCAATGCGGCGGCGTTTTTGGAGATGGTCATGGACCCGGTCCTGGTCAGCTCGTATCACGAGA TGGGCACGTGGTTTCTGAGCGAGAAGGATGATGCGACGCCGTTTTTCGCGGTTCACGGGAAGGAAGTGTACGAGCACATAGGCGGTCGGCCGGAGCTTAA CGACGTGTTTAACGAAGCGATGGCCGGGGATAGCCGCATGATTGCTGACGTGGTGGTCAACGAGGGGAAGTCTTTGTTTGAAGGGGTGAAGTCGCTTGTT GACGTGGCTGGTGGGACTGGTACTATTGCGAAGGCGATTGCCACGGCGTTCCCGGAGATGACGTGTACGGTGCTGGATCAGCCACATGTCGTGTCGGGAT TGGTTGATTGGGGGAATTTGAAGTTTGTTTCCGGTGACATGTTTCAGTCTATCCCTTCTGCTGACGTGGTTTTGCTCAAGTGGATACTTCACAATTGGAG CGACGAGAATTGTGTGAGGATACTGAAGAATTGCAAGAAGGCGGTAATGTCTAGCAATGGAGGAAGATCATCCATCGGAAAAATCATCGTGATCGACATG GTGGTGGAGGATGATCATAAGAACTTGGACGATGACGATGAGAAGAAAACTATGAGGACGACACATTACAATTTCGACATCCAAATGATGGTTAACGTGA GTGGGAAGGAGAGGAACGAGGAGGAGTTGACAAAACTGTTCAAGGAAGCAGGATTCAGTAGCTACAACATCAGCCCGATTTTCGGTCCGAGGGCTCTCAT CGAAGTCTATCCTTGA
AA sequence Show only first row Show all	>Lus10001510 pacid=23157247 polypeptide=Lus10001510 locus=Lus10001510.g ID=Lus10001510.BGIv1.0 annot-version=v1.0 MGSVNGDIKAETTSSSELLKAQTHVWNSTFSFVTSMSLKCAVQLGIPDVVNSNAGGKPISVPDLIAALKIPPTKSPHLHRLLRVLVHSGFLISDKGYYSL TTAGKLLRKDSPSNAAAFLEMVMDPVLVSSYHEMGTWFLSEKDDATPFFAVHGKEVYEHIGGRPELNDVFNEAMAGDSRMIADVVVNEGKSLFEGVKSLV DVAGGTGTIAKAIATAFPEMTCTVLDQPHVVSGLVDWGNLKFVSGDMFQSIPSADVVLLKWILHNWSDENCVRILKNCKKAVMSSNGGRSSIGKIIVIDM VVEDDHKNLDDDDEKKTMRTTHYNFDIQMMVNVSGKERNEEELTKLFKEAGFSSYNISPIFGPRALIEVYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35160			O-methyltransferase family pro...		Lus10001510 [exp]	0	1
AT5G50175			unknown protein		Lus10019469 [exp]	1.7	0.8820
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10041179 [exp]	2.0	0.8641
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10013469 [exp]	4.9	0.7959
AT1G33811			GDSL-like Lipase/Acylhydrolase...		Lus10000893 [exp]	6.3	0.8218
AT5G50175			unknown protein		Lus10043318 [exp]	6.9	0.8382
AT2G47485			unknown protein		Lus10028487 [exp]	10.2	0.8433
AT4G17486			PPPDE putative thiol peptidase...		Lus10043293 [exp]	10.2	0.8031
					Lus10020808 [exp]	14.3	0.7340
AT1G75450		ATCKX6, ATCKX5,...	CYTOKININ OXIDASE 6, ARABIDOPS...		Lus10024289 [exp]	22.6	0.7533
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10001789 [exp]	31.8	0.7808

Compare expression of checked genes

Lus10001510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.